biostudies-literatureUnknown65Luo H<h4>Introduction</h4>Golden pompano (Trachinotus ovatus) is economically significant important for offshore cage aquaculture in China and Southeast Asian countries. Lack of high-quality genomic data and accurate gene annotations greatly restricts its genetic breeding progress.<h4>Objectives</h4>To decode the mechanisms of sex determination and rapid growth in golden pompano and facilitate the sex- and growth-aimed genetic breeding.<h4>Methods</h4>Genome assemblies of male and female golden pompano were generated using Illumina, PacBio, BioNano, genetic maps and Hi-C sequencing data. Genomic comparisons, whole genome re-sequencing of 202 F1 individuals, QTL mapping and gonadal transcriptomes were used to analyze the sex determining region, sex chromosome evolution, SNP loci, and growth candJournal of advanced research1-17https://www.ebi.ac.uk/biostudies/studies/S-EPMC11518962biostudies-literatureThe male and female genomes of golden pompano (Trachinotus ovatus) provide insights into the sex chromosome evolution and rapid growth.PMC11518962Liu HJi CZhang JQin JZhou SLiu QMa ZLin YLuo HYang CZhao ZZhao YHe PWei PZheng HHuang YDai SZhang YChen XLiu FPeng JFeng PXu YfalseThe male and female genomes of golden pompano (Trachinotus ovatus) provide insights into the sex chromosome evolution and rapid growth.<h4>Introduction</h4>Golden pompano (Trachinotus ovatus) is economically significant important for offshore cage aquaculture in China and Southeast Asian countries. Lack of high-quality genomic data and accurate gene annotations greatly restricts its genetic breeding progress.<h4>Objectives</h4>To decode the mechanisms of sex determination and rapid growth in golden pompano and facilitate the sex- and growth-aimed genetic breeding.<h4>Methods</h4>Genome assemblies of male and female golden pompano were generated using Illumina, PacBio, BioNano, genetic maps and Hi-C sequencing data. Genomic comparisons, whole genome re-sequencing of 202 F1 individuals, QTL mapping and gonadal transcriptomes were used to analyze the sex determining region, sex chromosome evolution, SNP loci, and growth cand2024-01-01T00:00:00Z2024 Nov2026-04-08T18:36:46.702Z2025-04-06T14:23:39.276ZS-EPMC115189623804361010.1016/j.jare.2023.11.030