{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Park JY"],"funding":["National Research Foundation of Korea"],"pagination":["e1011464"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11548764"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["20(10)"],"pubmed_abstract":["Three RpoD-family sigma factors, RpoD, RpoS, and RpoH, play critical roles in transcriptional regulation in Salmonella enterica serovar Typhimurium under heat shock conditions. However, the genome-wide regulatory mechanisms of these sigma factors in response to heat stress have remained elusive. In this study, we comprehensively identified 2,319, 2,226, and 213 genome-wide binding sites for RpoD, RpoS, and RpoH, respectively, under sublethal heat shock conditions (42°C). Machine learning-based transcriptome analysis was employed to infer the relative activity of iModulons, providing valuable insights into the transcriptional impact of heat shock. Integrative data analysis enabled the reconstruction of the transcriptional regulatory network of sigma factors, revealing how they modulate gene"],"journal":["PLoS genetics"],"pubmed_title":["Unveiling the novel regulatory roles of RpoD-family sigma factors in Salmonella Typhimurium heat shock response through systems biology approaches."],"pmcid":["PMC11548764"],"funding_grant_id":["2021M3A9I4024840","2022M3A9I5018934","RS-2023-00208026"],"pubmed_authors":["Lee SM","Kim D","Lee EJ","Park JY","Jang M","Woo J"],"additional_accession":[]},"is_claimable":false,"name":"Unveiling the novel regulatory roles of RpoD-family sigma factors in Salmonella Typhimurium heat shock response through systems biology approaches.","description":"Three RpoD-family sigma factors, RpoD, RpoS, and RpoH, play critical roles in transcriptional regulation in Salmonella enterica serovar Typhimurium under heat shock conditions. However, the genome-wide regulatory mechanisms of these sigma factors in response to heat stress have remained elusive. In this study, we comprehensively identified 2,319, 2,226, and 213 genome-wide binding sites for RpoD, RpoS, and RpoH, respectively, under sublethal heat shock conditions (42°C). Machine learning-based transcriptome analysis was employed to infer the relative activity of iModulons, providing valuable insights into the transcriptional impact of heat shock. Integrative data analysis enabled the reconstruction of the transcriptional regulatory network of sigma factors, revealing how they modulate gene","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 Oct","modification":"2026-05-26T17:08:22.244Z","creation":"2025-04-04T23:32:25.353Z"},"accession":"S-EPMC11548764","cross_references":{"pubmed":["39471211"],"doi":["10.1371/journal.pgen.1011464"]}}