{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["He JB"],"funding":["National Natural Science Foundation of China","National Key Research and Development Program of China"],"pagination":["2969-2976"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11580168"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["63(22)"],"pubmed_abstract":["Cyclodipeptide synthases (CDPSs) catalyze the synthesis of diverse cyclodipeptides (CDPs) by utilizing two aminoacyl-tRNA (aa-tRNA) substrates in a sequential ping-pong reaction mechanism. Numerous CDPSs have been characterized to provide precursors for diketopiperazines (DKPs) with diverse structural characteristics and biological activities. BcmA, belonging to the XYP subfamily, is a cyclo(l-Ile-l-Leu)-synthesizing CDPS involved in the biosynthesis of the antibiotic bicyclomycin. The structural basis and determinants influencing BcmA enzyme activity and substrate selectivity are not well understood. Here, we report the crystal structure of <i>Ss</i>BcmA from <i>Streptomyces sapporonensis</i>. Through structural comparison and systematic site-directed mutagenesis, we highlight the signifi"],"journal":["Biochemistry"],"pubmed_title":["Crystal Structure and Mutagenesis of an XYP Subfamily Cyclodipeptide Synthase Reveal Key Determinants of Enzyme Activity and Substrate Specificity."],"pmcid":["PMC11580168"],"funding_grant_id":["22277132","22207117","2022YFC2303100"],"pubmed_authors":["Huang LJ","Tang GL","Liu YP","Ren Y","Li P","Fang P","Wang J","He JB","Pan HX"],"additional_accession":[]},"is_claimable":false,"name":"Crystal Structure and Mutagenesis of an XYP Subfamily Cyclodipeptide Synthase Reveal Key Determinants of Enzyme Activity and Substrate Specificity.","description":"Cyclodipeptide synthases (CDPSs) catalyze the synthesis of diverse cyclodipeptides (CDPs) by utilizing two aminoacyl-tRNA (aa-tRNA) substrates in a sequential ping-pong reaction mechanism. Numerous CDPSs have been characterized to provide precursors for diketopiperazines (DKPs) with diverse structural characteristics and biological activities. BcmA, belonging to the XYP subfamily, is a cyclo(l-Ile-l-Leu)-synthesizing CDPS involved in the biosynthesis of the antibiotic bicyclomycin. The structural basis and determinants influencing BcmA enzyme activity and substrate selectivity are not well understood. Here, we report the crystal structure of <i>Ss</i>BcmA from <i>Streptomyces sapporonensis</i>. Through structural comparison and systematic site-directed mutagenesis, we highlight the signifi","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 Nov","modification":"2026-06-03T05:31:14.595Z","creation":"2025-04-03T23:56:39.226Z"},"accession":"S-EPMC11580168","cross_references":{"pubmed":["39475147"],"doi":["10.1021/acs.biochem.4c00505"]}}