{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["4(1)"],"submitter":["Olson DR"],"pubmed_abstract":["In the age of long read sequencing, genomics researchers now have access to accurate repetitive DNA sequence (including satellites) that, due to the limitations of short read-sequencing, could previously be observed only as unmappable fragments. Tools that annotate repetitive sequence are now more important than ever, so that we can better understand newly uncovered repetitive sequences, and also so that we can mitigate errors in bioinformatic software caused by those repetitive sequences. To that end, we introduce the 1.0 release of our tool for identifying and annotating locally repetitive sequence, <b>U</b>LTRA <b>L</b>ocates <b>T</b>andemly <b>R</b>epetitive <b>A</b>reas (<i>ULTRA</i>). <i>ULTRA</i> is fast enough to use as part of an efficient annotation pipeline, produces state-of-th"],"journal":["Bioinformatics advances"],"pagination":["vbae149"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11580682"],"repository":["biostudies-literature"],"pubmed_title":["ULTRA-effective labeling of tandem repeats in genomic sequence."],"pmcid":["PMC11580682"],"pubmed_authors":["Olson DR","Wheeler TJ"],"additional_accession":[]},"is_claimable":false,"name":"ULTRA-effective labeling of tandem repeats in genomic sequence.","description":"In the age of long read sequencing, genomics researchers now have access to accurate repetitive DNA sequence (including satellites) that, due to the limitations of short read-sequencing, could previously be observed only as unmappable fragments. Tools that annotate repetitive sequence are now more important than ever, so that we can better understand newly uncovered repetitive sequences, and also so that we can mitigate errors in bioinformatic software caused by those repetitive sequences. To that end, we introduce the 1.0 release of our tool for identifying and annotating locally repetitive sequence, <b>U</b>LTRA <b>L</b>ocates <b>T</b>andemly <b>R</b>epetitive <b>A</b>reas (<i>ULTRA</i>). <i>ULTRA</i> is fast enough to use as part of an efficient annotation pipeline, produces state-of-th","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024","modification":"2025-04-04T01:21:07.07Z","creation":"2025-04-04T01:21:07.07Z"},"accession":"S-EPMC11580682","cross_references":{"pubmed":["39575229"],"doi":["10.1093/bioadv/vbae149"]}}