<HashMap><database>biostudies-literature</database><scores/><additional><submitter>Li T</submitter><funding>The Haiyan Fund Project</funding><funding>National Natural Science Foundation of China</funding><funding>Postgraduate Research &amp;amp; Practice Innovation Program of Harbin Medical University</funding><pagination>e010534</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC11590841</full_dataset_link><repository>biostudies-literature</repository><omics_type>Unknown</omics_type><volume>12(11)</volume><pubmed_abstract>&lt;h4>Background&lt;/h4>Despite the success of immune checkpoint inhibitor (ICI)-based combination therapies in hepatocellular carcinoma (HCC), its effectiveness remains confined to a subset of patients. The development of reliable, predictive markers is important for accurate patient stratification and further mechanistic understanding of therapy response.&lt;h4>Methods&lt;/h4>We comprehensively analyzed paired single-cell RNA transcriptome and T-cell repertoire profiles from 14 HCC ascites samples, collected from 7 patients before and after treatment with the combination of sintilimab (anti-PD-1) and bevacizumab (anti-VEGF).&lt;h4>Results&lt;/h4>We identify a widespread convergence on interferon (IFN) signaling across various immune cell lineages in treatment-responsive patients with HCC, indicating a co</pubmed_abstract><journal>Journal for immunotherapy of cancer</journal><pubmed_title>Integrated single-cell transcriptome and TCR profiles of hepatocellular carcinoma highlight the convergence on interferon signaling during immunotherapy.</pubmed_title><pmcid>PMC11590841</pmcid><funding_grant_id>82273492</funding_grant_id><funding_grant_id>82394454</funding_grant_id><funding_grant_id>YJSCX2024-12HYD</funding_grant_id><funding_grant_id>JJMS2023-01</funding_grant_id><pubmed_authors>Hou Z</pubmed_authors><pubmed_authors>Xu C</pubmed_authors><pubmed_authors>Zhang M</pubmed_authors><pubmed_authors>Kong D</pubmed_authors><pubmed_authors>Wang G</pubmed_authors><pubmed_authors>Guo S</pubmed_authors><pubmed_authors>Lyu C</pubmed_authors><pubmed_authors>Xu H</pubmed_authors><pubmed_authors>Li X</pubmed_authors><pubmed_authors>Li T</pubmed_authors><pubmed_authors>Ren J</pubmed_authors><pubmed_authors>Liu C</pubmed_authors><pubmed_authors>Hao D</pubmed_authors></additional><is_claimable>false</is_claimable><name>Integrated single-cell transcriptome and TCR profiles of hepatocellular carcinoma highlight the convergence on interferon signaling during immunotherapy.</name><description>&lt;h4>Background&lt;/h4>Despite the success of immune checkpoint inhibitor (ICI)-based combination therapies in hepatocellular carcinoma (HCC), its effectiveness remains confined to a subset of patients. The development of reliable, predictive markers is important for accurate patient stratification and further mechanistic understanding of therapy response.&lt;h4>Methods&lt;/h4>We comprehensively analyzed paired single-cell RNA transcriptome and T-cell repertoire profiles from 14 HCC ascites samples, collected from 7 patients before and after treatment with the combination of sintilimab (anti-PD-1) and bevacizumab (anti-VEGF).&lt;h4>Results&lt;/h4>We identify a widespread convergence on interferon (IFN) signaling across various immune cell lineages in treatment-responsive patients with HCC, indicating a co</description><dates><release>2024-01-01T00:00:00Z</release><publication>2024 Nov</publication><modification>2026-06-01T12:50:15.712Z</modification><creation>2025-04-04T01:20:00.541Z</creation></dates><accession>S-EPMC11590841</accession><cross_references><pubmed>39581706</pubmed><doi>10.1136/jitc-2024-010534</doi></cross_references></HashMap>