{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Zhu F"],"funding":["Japan Society for the Promotion of Science (JSPS) KAKENHI","Japan Science and Technology Agency (JST) SPRING"],"pagination":["41"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11768080"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["13(1)"],"pubmed_abstract":["The assembly of plant root microbiomes is a dynamic process. Understanding the roles of root-associated microbiomes in rice development requires dissecting their assembly throughout the rice life cycle under diverse environments and exploring correlations with soil properties and rice physiology. In this study, we performed amplicon sequencing targeting fungal ITS and the bacterial 16S rRNA gene to characterize and compare bacterial and fungal community dynamics of the rice root endosphere and soil in organic and conventional paddy fields. Our analysis revealed that root microbial diversity and composition was significantly influenced by agricultural practices and rice developmental stages (<i>p</i> < 0.05). The root microbiome in the organic paddy field showed greater temporal variability"],"journal":["Microorganisms"],"pubmed_title":["A Comparison of Rice Root Microbial Dynamics in Organic and Conventional Paddy Fields."],"pmcid":["PMC11768080"],"funding_grant_id":["23K18023","JPMJSP2108","24K01892","23KJ0514","20K05955","20H00418","24H00509","19KT0033"],"pubmed_authors":["Wu J","Fujimoto M","Gong S","Nakanishi H","Zhu F","Fujiwara T","Kamiya T","Hashimoto M"],"additional_accession":[]},"is_claimable":false,"name":"A Comparison of Rice Root Microbial Dynamics in Organic and Conventional Paddy Fields.","description":"The assembly of plant root microbiomes is a dynamic process. Understanding the roles of root-associated microbiomes in rice development requires dissecting their assembly throughout the rice life cycle under diverse environments and exploring correlations with soil properties and rice physiology. In this study, we performed amplicon sequencing targeting fungal ITS and the bacterial 16S rRNA gene to characterize and compare bacterial and fungal community dynamics of the rice root endosphere and soil in organic and conventional paddy fields. Our analysis revealed that root microbial diversity and composition was significantly influenced by agricultural practices and rice developmental stages (<i>p</i> < 0.05). The root microbiome in the organic paddy field showed greater temporal variability","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 Dec","modification":"2026-04-20T03:19:09.778Z","creation":"2025-04-05T21:19:06.91Z"},"accession":"S-EPMC11768080","cross_references":{"pubmed":["39858809"],"doi":["10.3390/microorganisms13010041"]}}