{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Butler I"],"funding":["Department for Science, Innovation and Technology","National Institute for Health and Care Research"],"pagination":["1517208"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11922894"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["15"],"pubmed_abstract":["The integration of long-read sequencing technology, such as nanopore sequencing technology [Oxford Nanopore Technologies (ONT)], into routine diagnostic laboratories has the potential to transform bacterial infection diagnostics and improve patient management. Analysis of amplicons from long-read sequencing of the 16S rRNA gene generates a comprehensive view of the microbial community within clinical samples, significantly enhancing sensitivity and capacity to analyse mixed bacterial populations compared to short read sequencing approaches. This study evaluates various ONT sequencing approaches and library preparation kits to establish a reliable testing and quality framework for clinical implementation. This study highlights the critical importance of using well-characterized reference ma"],"journal":["Frontiers in cellular and infection microbiology"],"pubmed_title":["Standardization of 16S rRNA gene sequencing using nanopore long read sequencing technology for clinical diagnosis of culture negative infections."],"pmcid":["PMC11922894"],"funding_grant_id":["NIHR300448, PRP-002541"],"pubmed_authors":["O'Sullivan DM","Sergaki C","Lambourne J","Turner O","Butler I","Akhtar M","Mohammed K","Evans D","Harris K"],"additional_accession":[]},"is_claimable":false,"name":"Standardization of 16S rRNA gene sequencing using nanopore long read sequencing technology for clinical diagnosis of culture negative infections.","description":"The integration of long-read sequencing technology, such as nanopore sequencing technology [Oxford Nanopore Technologies (ONT)], into routine diagnostic laboratories has the potential to transform bacterial infection diagnostics and improve patient management. Analysis of amplicons from long-read sequencing of the 16S rRNA gene generates a comprehensive view of the microbial community within clinical samples, significantly enhancing sensitivity and capacity to analyse mixed bacterial populations compared to short read sequencing approaches. This study evaluates various ONT sequencing approaches and library preparation kits to establish a reliable testing and quality framework for clinical implementation. This study highlights the critical importance of using well-characterized reference ma","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025","modification":"2026-07-16T22:56:28.303Z","creation":"2025-04-20T00:11:53.941Z"},"accession":"S-EPMC11922894","cross_references":{"pubmed":["40115075"],"doi":["10.3389/fcimb.2025.1517208"]}}