{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Lin WJ"],"funding":["China Medical University, Taiwan","National Science and Technology Council, Taiwan","Cancer Biology and Precision Therapeutics Center, China Medical University","China Medical University Hospital, Taiwan"],"pagination":["btaf110"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11974499"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["41(4)"],"pubmed_abstract":["<h4>Motivation</h4>Lipids play crucial roles in various biological functions and diseases. However, a gap exists in databases providing information of lipids functions based on curated information. Consequently, LipidFun is purposed as the first lipid function database with sentence-level evidence detailing lipid-related phenotypes and biological functions.<h4>Results</h4>Potential lipid functions were extracted from the biomedical literature using natural language processing techniques, with accuracy and reliability ensured through manual curation by four domain experts. LipidFun constructs classification systems for lipids, biological functions, and phenotypes for named entity recognition. Sentence-level evidence is extracted to highlight connections to lipid-associated biological proces"],"journal":["Bioinformatics (Oxford, England)"],"pubmed_title":["LipidFun: a database of lipid functions."],"pmcid":["PMC11974499"],"funding_grant_id":["113-2311-B-039-001-MY3"],"pubmed_authors":["Liu CH","Hung MC","Lin WJ","Huang MS","Lai YL","Wang YD","Shen PC","Tsai MH","Liu HC","Chang NW","Cheng WC"],"additional_accession":[]},"is_claimable":false,"name":"LipidFun: a database of lipid functions.","description":"<h4>Motivation</h4>Lipids play crucial roles in various biological functions and diseases. However, a gap exists in databases providing information of lipids functions based on curated information. Consequently, LipidFun is purposed as the first lipid function database with sentence-level evidence detailing lipid-related phenotypes and biological functions.<h4>Results</h4>Potential lipid functions were extracted from the biomedical literature using natural language processing techniques, with accuracy and reliability ensured through manual curation by four domain experts. LipidFun constructs classification systems for lipids, biological functions, and phenotypes for named entity recognition. Sentence-level evidence is extracted to highlight connections to lipid-associated biological proces","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Mar","modification":"2025-07-14T03:02:49.252Z","creation":"2025-07-14T03:02:49.252Z"},"accession":"S-EPMC11974499","cross_references":{"pubmed":["40080702"],"doi":["10.1093/bioinformatics/btaf110"]}}