{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Sturrock S"],"funding":["UTAS","Scion","Ministry of Business, Innovation and Employment","RPBC","Australian Government","Scion Strategic Science Investment Funding","Australian Research Council"],"pagination":["jkaf125"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12341877"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["15(8)"],"pubmed_abstract":["Pinus radiata D. Don is one of the most widely planted exotic conifers. It is also a threatened species because native populations are small, disjunct, and challenged by pests and pathogens, deforestation, and climate maladaptation. Genomic tools can both enhance genetic improvement in operational breeding programs, and support conservation efforts. Using PacBio long-read sequencing, we assembled 20.6 Gbp of the large and complex P. radiata genome into 305,330 scaffolds, achieving a scaffold N50 of 196.22 kbp, which corresponds to 89% of its estimated genome size. Gene annotation, based on transcriptome data with a 97.9% BUSCO score, yielded 86,039 gene models. Linkage maps were used to anchor 7,952 contigs totaling 1.79 Gbp (approximately 9% of the assembly) across 12 pseudomolecules, whi"],"journal":["G3 (Bethesda, Md.)"],"pubmed_title":["Pinus radiata genome reveals a downward demographic trajectory and opportunities for genomics-assisted breeding."],"pmcid":["PMC12341877"],"funding_grant_id":["UTAS 9408","DE200101133","C04X1808","Scion QT9412","CN012641","QT10378","C04X1703"],"pubmed_authors":["Frickey T","Freeman J","Paget M","Sturrock S","Gea P","Wilcox P","Slavov G","Mercier C","Sussmilch F","Fritsche S","Graham N","Macdonald L","Telfer E","Rippel Salgado L","Butler J","Dungey H"],"additional_accession":[]},"is_claimable":false,"name":"Pinus radiata genome reveals a downward demographic trajectory and opportunities for genomics-assisted breeding.","description":"Pinus radiata D. Don is one of the most widely planted exotic conifers. It is also a threatened species because native populations are small, disjunct, and challenged by pests and pathogens, deforestation, and climate maladaptation. Genomic tools can both enhance genetic improvement in operational breeding programs, and support conservation efforts. Using PacBio long-read sequencing, we assembled 20.6 Gbp of the large and complex P. radiata genome into 305,330 scaffolds, achieving a scaffold N50 of 196.22 kbp, which corresponds to 89% of its estimated genome size. Gene annotation, based on transcriptome data with a 97.9% BUSCO score, yielded 86,039 gene models. Linkage maps were used to anchor 7,952 contigs totaling 1.79 Gbp (approximately 9% of the assembly) across 12 pseudomolecules, whi","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Aug","modification":"2026-04-07T20:15:57.402Z","creation":"2026-04-07T17:35:26.419Z"},"accession":"S-EPMC12341877","cross_references":{"pubmed":["40468970"],"doi":["10.1093/g3journal/jkaf125"]}}