{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Unglert N"],"funding":["Austrian Science Fund FWF","Engineering and Physical Sciences Research Council"],"pagination":["7304-7319"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12355697"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["21(15)"],"pubmed_abstract":["Nested sampling (NS) has emerged as a powerful tool for exploring thermodynamic properties in materials science. However, its efficiency is often hindered by the limitations of Markov chain Monte Carlo (MCMC) sampling. In strongly multimodal landscapes, MCMC struggles to traverse energy barriers, leading to biased sampling and reduced accuracy. To address this issue, we introduce replica-exchange nested sampling (RENS), a novel enhancement that integrates replica-exchange moves into the NS framework. Inspired by Hamiltonian replica exchange methods, RENS connects independent NS simulations performed under different external conditions, facilitating ergodic sampling and significantly improving computational efficiency. We demonstrate the effectiveness of RENS using four test systems of increasing complexity: a one-dimensional toy system, periodic Lennard-Jones, the two-scale core-softened Jagla model, and a machine-learned interatomic potential for silicon. Our results show that RENS not only accelerates convergence but also allows the effective handling of challenging cases where independent NS fails, thereby expanding the applicability of NS to more realistic material models."],"journal":["Journal of chemical theory and computation"],"pubmed_title":["Replica Exchange Nested Sampling."],"pmcid":["PMC12355697"],"funding_grant_id":["EP/T000163/1","10.55776/F81"],"pubmed_authors":["Partay LB","Unglert N","Madsen GKH"],"additional_accession":[]},"is_claimable":false,"name":"Replica Exchange Nested Sampling.","description":"Nested sampling (NS) has emerged as a powerful tool for exploring thermodynamic properties in materials science. However, its efficiency is often hindered by the limitations of Markov chain Monte Carlo (MCMC) sampling. In strongly multimodal landscapes, MCMC struggles to traverse energy barriers, leading to biased sampling and reduced accuracy. To address this issue, we introduce replica-exchange nested sampling (RENS), a novel enhancement that integrates replica-exchange moves into the NS framework. Inspired by Hamiltonian replica exchange methods, RENS connects independent NS simulations performed under different external conditions, facilitating ergodic sampling and significantly improving computational efficiency. We demonstrate the effectiveness of RENS using four test systems of increasing complexity: a one-dimensional toy system, periodic Lennard-Jones, the two-scale core-softened Jagla model, and a machine-learned interatomic potential for silicon. Our results show that RENS not only accelerates convergence but also allows the effective handling of challenging cases where independent NS fails, thereby expanding the applicability of NS to more realistic material models.","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Aug","modification":"2026-04-18T11:17:18.121Z","creation":"2026-04-07T14:34:39.63Z"},"accession":"S-EPMC12355697","cross_references":{"pubmed":["40707037"],"doi":["10.1021/acs.jctc.5c00588"]}}