{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["46(12)"],"submitter":["Muganga T"],"funding":["Helmholtz Portfolio Theme \"Supercomputing and Modelling for the Human Brain\""],"pubmed_abstract":["Removal of nuisance signals (such as motion) from the BOLD time series is an important aspect of preprocessing to obtain meaningful resting-state functional connectivity (rs-FC). The nuisance signals are commonly removed using denoising procedures at the finest resolution, that is the voxel time series. Typically, the voxel-wise time series are then aggregated into predefined regions or parcels to obtain an rs-FC matrix as the correlation between pairs of regional time series. Computational efficiency can be improved by denoising the aggregated regional time series instead of the voxel time series. However, a comprehensive comparison of the effects of denoising on these two resolutions is missing. In this study, we systematically investigate the effects of denoising at different time series resolutions (voxel-level and region-level) in 370 unrelated subjects from the HCP-YA dataset. Alongside the time series resolution, we considered additional factors such as aggregation method (Mean and first eigenvariate [EV]) and parcellation granularity (100, 400, and 1000 regions). To assess the effect of those choices on the utility of the resulting whole-brain rs-FC, we evaluated the individual specificity (fingerprinting) and the capacity to predict age and three cognitive scores. Our findings show generally equal or better performance for region-level denoising with notable differences depending on the aggregation method. Using Mean aggregation yielded equal individual specificity and prediction performance for voxel-level and region-level denoising. When EV was employed for aggregation, the individual specificity of voxel-level denoising was reduced compared to region-level denoising. Increasing parcellation granularity generally improved individual specificity. For the prediction of age and cognitive test scores, only fluid intelligence indicated worse performance for voxel-level denoising in the case of aggregating with the EV. Based on these results, we recommend the adoption of region-level denoising for brain-behavior investigations when using Mean aggregation. This approach offers equal individual specificity and prediction capacity with reduced computational resources for the analysis of rs-FC patterns."],"journal":["Human brain mapping"],"pagination":["e70323"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12368596"],"repository":["biostudies-literature"],"pubmed_title":["Voxel-Wise or Region-Wise Nuisance Regression for Functional Connectivity Analyses: Does It Matter?"],"pmcid":["PMC12368596"],"pubmed_authors":["Patil KR","Sasse L","Eickhoff SB","Nieto N","Larabi DI","Caspers J","Muganga T"],"additional_accession":[]},"is_claimable":false,"name":"Voxel-Wise or Region-Wise Nuisance Regression for Functional Connectivity Analyses: Does It Matter?","description":"Removal of nuisance signals (such as motion) from the BOLD time series is an important aspect of preprocessing to obtain meaningful resting-state functional connectivity (rs-FC). The nuisance signals are commonly removed using denoising procedures at the finest resolution, that is the voxel time series. Typically, the voxel-wise time series are then aggregated into predefined regions or parcels to obtain an rs-FC matrix as the correlation between pairs of regional time series. Computational efficiency can be improved by denoising the aggregated regional time series instead of the voxel time series. However, a comprehensive comparison of the effects of denoising on these two resolutions is missing. In this study, we systematically investigate the effects of denoising at different time series resolutions (voxel-level and region-level) in 370 unrelated subjects from the HCP-YA dataset. Alongside the time series resolution, we considered additional factors such as aggregation method (Mean and first eigenvariate [EV]) and parcellation granularity (100, 400, and 1000 regions). To assess the effect of those choices on the utility of the resulting whole-brain rs-FC, we evaluated the individual specificity (fingerprinting) and the capacity to predict age and three cognitive scores. Our findings show generally equal or better performance for region-level denoising with notable differences depending on the aggregation method. Using Mean aggregation yielded equal individual specificity and prediction performance for voxel-level and region-level denoising. When EV was employed for aggregation, the individual specificity of voxel-level denoising was reduced compared to region-level denoising. Increasing parcellation granularity generally improved individual specificity. For the prediction of age and cognitive test scores, only fluid intelligence indicated worse performance for voxel-level denoising in the case of aggregating with the EV. Based on these results, we recommend the adoption of region-level denoising for brain-behavior investigations when using Mean aggregation. This approach offers equal individual specificity and prediction capacity with reduced computational resources for the analysis of rs-FC patterns.","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Aug","modification":"2026-05-07T05:05:42.053Z","creation":"2026-04-07T22:34:19.575Z"},"accession":"S-EPMC12368596","cross_references":{"pubmed":["40838474"],"doi":["10.1002/hbm.70323"]}}