biostudies-literatureNishida HNew Energy and Industrial Technology Development Organization (NEDO)8023https://www.ebi.ac.uk/biostudies/studies/S-EPMC12411642biostudies-literatureUnknown16(1)Soybeans fix atmospheric N₂ through symbiosis with rhizobia. The relationship between rhizobia and soybeans, particularly those with high nitrous oxide (N₂O)-reducing (N₂OR) activities, can be leveraged to reduce N₂O emissions from agricultural soils. However, inoculating soybeans with these rhizobia under field conditions often fails because of the competition from indigenous rhizobia that possess low or no N₂OR activity. In this work, we utilize natural incompatibility systems between soybean and rhizobia to address this challenge. Specifically, Rj2 and GmNNL1 inhibit certain rhizobial infections in response to NopP, an effector protein. By combining a soybean line with a hybrid accumulation of the Rj2 and GmNNL1 genes and bradyrhizobia lacking the nopP gene, we develop a soybean-bradyrhizobial symbiosis system in which strains with high N₂OR activity predominantly infect. Our optimize symbiotic system substantially reduces N₂O emissions in field and laboratory tests, presenting a promising approach for sustainable agricultural practices.Nature communicationsGenetic design of soybean hosts and bradyrhizobial endosymbionts reduces N<sub>2</sub>O emissions from soybean rhizosphere.PMC12411642JPNP18016Shibata AWin KTImaizumi-Anraku HLi FShenton MSugawara MFujisawa YNishida HShimoda YSuzuki AKakizaki KAkiyama HMasuda SItakura MOhkubo STsubokura MMinamisawa KTakahashi KShirasu KDuc LVfalseGenetic design of soybean hosts and bradyrhizobial endosymbionts reduces N<sub>2</sub>O emissions from soybean rhizosphere.Soybeans fix atmospheric N₂ through symbiosis with rhizobia. The relationship between rhizobia and soybeans, particularly those with high nitrous oxide (N₂O)-reducing (N₂OR) activities, can be leveraged to reduce N₂O emissions from agricultural soils. However, inoculating soybeans with these rhizobia under field conditions often fails because of the competition from indigenous rhizobia that possess low or no N₂OR activity. In this work, we utilize natural incompatibility systems between soybean and rhizobia to address this challenge. Specifically, Rj2 and GmNNL1 inhibit certain rhizobial infections in response to NopP, an effector protein. By combining a soybean line with a hybrid accumulation of the Rj2 and GmNNL1 genes and bradyrhizobia lacking the nopP gene, we develop a soybean-bradyrhizobial symbiosis system in which strains with high N₂OR activity predominantly infect. Our optimize symbiotic system substantially reduces N₂O emissions in field and laboratory tests, presenting a promising approach for sustainable agricultural practices.2025-01-01T00:00:00Z2025 Sep2026-05-29T21:23:34.374Z2026-04-08T06:00:33.215ZS-EPMC124116424090828210.1038/s41467-025-63223-6