{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Wang TY"],"funding":["National Taiwan University","National Science and Technology Council","Biodiversity Research Center, Academia Sinica"],"pagination":["e14110"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12415946"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["25(7)"],"pubmed_abstract":["The percomorph fish clade Gobioidei is a suborder that comprises over 2200 species distributed in nearly all aquatic habitats. To understand the genetics underlying their species diversification, we sequenced and annotated the genome of the loach goby, Rhyacichthys aspro, an early-diverging group, and compared it with nine additional Gobioidei species. Within Gobioidei, the loach goby possesses the smallest genome at 594 Mb, and a rise in species diversity from early-diverging to more recently diverged lineages is mirrored by enlarged genomes and a higher presence of transposable elements (TEs), particularly DNA transposons. These DNA transposons are enriched in genic and regulatory regions and their copy number increase is strongly correlated with substitution rate, suggesting that DNA re"],"journal":["Molecular ecology resources"],"pubmed_title":["Chromosome-Level Genome Assembly of the Loach Goby Rhyacichthys aspro Offers Insights Into Gobioidei Evolution."],"pmcid":["PMC12415946"],"funding_grant_id":["MOST 109‐2311‐B‐002‐023‐MY3","MOST 109-2311-B-002-023-MY3","23-23","MOST 108-2621-B-001-002","MOST 102‐2311‐B‐001‐019","MOST 108‐2621‐B‐001‐002","MOST 102-2311-B-001-019","113L7223"],"pubmed_authors":["Huang SP","Wang FY","Wang TY","Yu TH","Ting CT","Chaw SM","Liao TY","Tai JH","Lu HJ","Wu YW","Wang HY"],"additional_accession":[]},"is_claimable":false,"name":"Chromosome-Level Genome Assembly of the Loach Goby Rhyacichthys aspro Offers Insights Into Gobioidei Evolution.","description":"The percomorph fish clade Gobioidei is a suborder that comprises over 2200 species distributed in nearly all aquatic habitats. To understand the genetics underlying their species diversification, we sequenced and annotated the genome of the loach goby, Rhyacichthys aspro, an early-diverging group, and compared it with nine additional Gobioidei species. Within Gobioidei, the loach goby possesses the smallest genome at 594 Mb, and a rise in species diversity from early-diverging to more recently diverged lineages is mirrored by enlarged genomes and a higher presence of transposable elements (TEs), particularly DNA transposons. These DNA transposons are enriched in genic and regulatory regions and their copy number increase is strongly correlated with substitution rate, suggesting that DNA re","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Oct","modification":"2026-06-03T05:58:38.148Z","creation":"2026-04-25T03:16:57.517Z"},"accession":"S-EPMC12415946","cross_references":{"pubmed":["40168108"],"doi":["10.1111/1755-0998.14110"]}}