{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Boerstler T"],"funding":["Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)","Bundesministerium für Bildung und Forschung","Else Kröner-Fresenius-Stiftung (Else Kroner-Fresenius Foundation)","Deutsche Forschungsgemeinschaft","Deutsche Forschungsgemeinschaft (German Research Foundation)","Friedrich Alexander University of Erlangen Nuremberg | Medizinische Fakultät, Friedrich-Alexander-Universität Erlangen-Nürnberg","Else Kröner-Fresenius-Stiftung","Friedrich Alexander University of Erlangen Nuremberg | Medizinische Fakultät, Friedrich-Alexander-Universität Erlangen-Nürnberg (Faculty of Medicine, Friedrich Alexander University of Erlangen Nuremberg)"],"pagination":["1412"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12488937"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["8(1)"],"pubmed_abstract":["Brain organoids derived from human pluripotent stem cells (hPSCs) hold immense potential for modeling neurodevelopmental processes and disorders. However, their experimental variability and undefined organoid selection criteria for analysis hinder reproducibility. As part of the Bavarian ForInter consortium, we generated 72 brain organoids from distinct hPSC lines. We conducted a comprehensive analysis of their morphological and cellular characteristics at an early stage of their development. In our assessment, the Feret diameter emerged as a reliable, single parameter that characterizes brain organoid quality. Transcriptomic analysis of our organoid identified the abundance of unintended mesodermal differentiation as a major confounder of unguided brain organoid differentiation, correlati"],"journal":["Communications biology"],"pubmed_title":["Deciphering brain organoid heterogeneity by identifying key quality determinants."],"pmcid":["PMC12488937"],"funding_grant_id":["01GM2209B","01GM1905B","WI 3567/2-1","J-122","P153","2024_EKEA.50","GRK2162/ 270949263"],"pubmed_authors":["Krach F","Ploetz S","Theis F","Karow M","Boerstler T","Winner B","Gunther C","Zappia L","Kachkin D","Farrell M","Nayebzade N","Falk S","Zagha N","Regensburger M","Boisvert M","Winkler J","Furlanetto F","Prots I","Gupta P","Gerasimova E"],"additional_accession":[]},"is_claimable":false,"name":"Deciphering brain organoid heterogeneity by identifying key quality determinants.","description":"Brain organoids derived from human pluripotent stem cells (hPSCs) hold immense potential for modeling neurodevelopmental processes and disorders. However, their experimental variability and undefined organoid selection criteria for analysis hinder reproducibility. As part of the Bavarian ForInter consortium, we generated 72 brain organoids from distinct hPSC lines. We conducted a comprehensive analysis of their morphological and cellular characteristics at an early stage of their development. In our assessment, the Feret diameter emerged as a reliable, single parameter that characterizes brain organoid quality. Transcriptomic analysis of our organoid identified the abundance of unintended mesodermal differentiation as a major confounder of unguided brain organoid differentiation, correlati","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Oct","modification":"2026-06-06T13:37:54.21Z","creation":"2026-05-31T03:07:59.938Z"},"accession":"S-EPMC12488937","cross_references":{"pubmed":["41034331"],"doi":["10.1038/s42003-025-08855-6"]}}