{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["17(1)"],"submitter":["Bayne J"],"pubmed_abstract":["Understanding gut-host microbiota interactions requires models that replicate human physiology while providing region-specific resolution, translational precision, and minimal animal use. To this end, we developed the IsoLoop model, a swine gut loop platform enabling intra-animal, multi-treatment comparisons. Microbiota-depleted ileal loops were surgically created in pigs, maintaining neurovascular integrity while isolating them from the anastomosed digestive tract. In Experiment 1, loops were inoculated with human fecal microbiota (HFM) or HFM combined with <i>Peptacetobacter hiranonis</i>. In Experiment 2, they were inoculated with <i>Clostridioides difficile</i>. Host-microbiota interactions were compared with respective controls in each experiment. The IsoLoop model reduced animal use "],"journal":["Gut microbes"],"pagination":["2568706"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12562777"],"repository":["biostudies-literature"],"pubmed_title":["The swine IsoLoop model of the gut host-microbiota interface enables intra-animal treatment comparisons to advance 3R principles."],"pmcid":["PMC12562777"],"pubmed_authors":["Hu Y","Bayne J","Muyyarikkandy MS","Kuijper E","Sauer M","Smits WK","Scaria J","Sponseller B","Michael A","Nibbering B","Murphy M","Opriessnig T","Yousefi F","Ramirez A","Charavaryamath C","Law A","Mooyottu S"],"additional_accession":[]},"is_claimable":false,"name":"The swine IsoLoop model of the gut host-microbiota interface enables intra-animal treatment comparisons to advance 3R principles.","description":"Understanding gut-host microbiota interactions requires models that replicate human physiology while providing region-specific resolution, translational precision, and minimal animal use. To this end, we developed the IsoLoop model, a swine gut loop platform enabling intra-animal, multi-treatment comparisons. Microbiota-depleted ileal loops were surgically created in pigs, maintaining neurovascular integrity while isolating them from the anastomosed digestive tract. In Experiment 1, loops were inoculated with human fecal microbiota (HFM) or HFM combined with <i>Peptacetobacter hiranonis</i>. In Experiment 2, they were inoculated with <i>Clostridioides difficile</i>. Host-microbiota interactions were compared with respective controls in each experiment. The IsoLoop model reduced animal use ","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Dec","modification":"2026-06-05T09:24:13.471Z","creation":"2026-05-15T03:12:58.697Z"},"accession":"S-EPMC12562777","cross_references":{"pubmed":["41137517"],"doi":["10.1080/19490976.2025.2568706"]}}