{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Alfreider A"],"funding":["Austrian Science Fund FWF"],"pagination":["42232"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12658065"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["15(1)"],"pubmed_abstract":["This study investigates the occurrence and diversity of ammonia- and nitrite-oxidizing prokaryotes in the water columns of four stratified lakes by analyzing 16S rRNA genes in DNA and RNA extracts. The taxonomic composition of nitrifiers differed between two lake types, with considerable depth-related variation within each lake. In large and deep lakes (Zürichsee and Achensee), the oxygenated hypolimnion was dominated by Ca. Nitrosopumilus, accounting for a quarter of the total 16S rRNA genes. Nitrospira rRNA genes were generally an order of magnitude less abundant than those of Ca. Nitrosopumilus. However, analyses of rRNA in the same samples revealed a significantly higher relative abundance of Nitrospira ribosomes, reaching up to one-third of the abundance of Ca. Nitrosopumilus ribosome"],"journal":["Scientific reports"],"pubmed_title":["Depth-dependent distribution patterns of ammonia- and nitrite-oxidizing microorganisms in the water column of stratified lakes."],"pmcid":["PMC12658065"],"funding_grant_id":["grants 10.55776/P36812 and 10.55776/P25703"],"pubmed_authors":["Posch T","Summerer M","Alfreider A"],"additional_accession":[]},"is_claimable":false,"name":"Depth-dependent distribution patterns of ammonia- and nitrite-oxidizing microorganisms in the water column of stratified lakes.","description":"This study investigates the occurrence and diversity of ammonia- and nitrite-oxidizing prokaryotes in the water columns of four stratified lakes by analyzing 16S rRNA genes in DNA and RNA extracts. The taxonomic composition of nitrifiers differed between two lake types, with considerable depth-related variation within each lake. In large and deep lakes (Zürichsee and Achensee), the oxygenated hypolimnion was dominated by Ca. Nitrosopumilus, accounting for a quarter of the total 16S rRNA genes. Nitrospira rRNA genes were generally an order of magnitude less abundant than those of Ca. Nitrosopumilus. However, analyses of rRNA in the same samples revealed a significantly higher relative abundance of Nitrospira ribosomes, reaching up to one-third of the abundance of Ca. Nitrosopumilus ribosome","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Nov","modification":"2026-06-05T21:20:58.795Z","creation":"2026-05-22T03:08:57.477Z"},"accession":"S-EPMC12658065","cross_references":{"pubmed":["41276511"],"doi":["10.1038/s41598-025-26324-2"]}}