{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["13(1)"],"submitter":["Tanaka A"],"pubmed_abstract":["Solid pseudopapillary neoplasm (SPN) of the pancreas is a rare but distinct disease that remains poorly understood, especially at proteome level. We report comprehensive mass spectrometry-based proteomic analyses of SPN (n = 13) and characterize differences from other pancreatic neoplasms, pancreatic ductal adenocarcinoma (n = 11) and neuroendocrine tumor (n = 10). We discovered that the SPN proteome is uniquely distinct from that of other pancreatic neoplasms. Lysosome-related proteins are enriched and upstream lysosomal processes transcriptional regulators, MITF and TFE3, are overexpressed in SPN. MITF protein expression is more specific for SPN than TFE3, previously considered the most specific immunohistochemical marker. Since lysosomal-related processes are connected to biological ene"],"journal":["Biomarker research"],"pagination":["159"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12752135"],"repository":["biostudies-literature"],"pubmed_title":["Deep proteogenomic characterization of pancreatic solid pseudopapillary neoplasm reveals unique features distinct from other pancreatic tumors."],"pmcid":["PMC12752135"],"pubmed_authors":["Klimstra DS","Basturk O","Vyas MM","Otani Y","Tanaka A","Roehrl MHA","Wang JY"],"additional_accession":[]},"is_claimable":false,"name":"Deep proteogenomic characterization of pancreatic solid pseudopapillary neoplasm reveals unique features distinct from other pancreatic tumors.","description":"Solid pseudopapillary neoplasm (SPN) of the pancreas is a rare but distinct disease that remains poorly understood, especially at proteome level. We report comprehensive mass spectrometry-based proteomic analyses of SPN (n = 13) and characterize differences from other pancreatic neoplasms, pancreatic ductal adenocarcinoma (n = 11) and neuroendocrine tumor (n = 10). We discovered that the SPN proteome is uniquely distinct from that of other pancreatic neoplasms. Lysosome-related proteins are enriched and upstream lysosomal processes transcriptional regulators, MITF and TFE3, are overexpressed in SPN. MITF protein expression is more specific for SPN than TFE3, previously considered the most specific immunohistochemical marker. Since lysosomal-related processes are connected to biological ene","dates":{"release":"2025-01-01T00:00:00Z","publication":"2025 Nov","modification":"2026-05-28T03:18:00.82Z","creation":"2026-05-28T03:11:30.794Z"},"accession":"S-EPMC12752135","cross_references":{"pubmed":["41310888"],"doi":["10.1186/s40364-025-00875-y"]}}