{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Sinn LR"],"funding":["Sonderforschungsbereich (SFB)","Ministry of Education and Research (BMBF), as part of the National Research Node \"Mass Spectrometry in Systems Medicine\" (MSCoreSys)","Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)","European Research Council","Swiss canton of Grisons (Kanton Graubünden)","Precision Proteomics Center Davos"],"pagination":["68-81"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12809002"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["26(1)"],"pubmed_abstract":["Proteomic experiments, particularly those addressing dynamic proteome properties, time series, or genetic diversity, require the analysis of large sample numbers. Despite significant advancements in proteomic technologies in recent years, further improvements are needed to accelerate measurement and enhance proteome coverage and quantitative performance. Previously, we demonstrated that incorporating a scanning MS2 dimension into data-independent acquisition (DIA) methods (Scanning SWATH, or more generally scanning DIA), but also ion trapping, improves analytical depth and quantitative performance, especially in proteomic methods using fast chromatography. Here, we evaluate the scanning DIA approach combined with ion trapping via the Zeno trap in a method termed ZT Scan DIA, using a ZenoTO"],"journal":["Proteomics"],"pubmed_title":["Performance Characteristics of Zeno Trap Scanning DIA for Sensitive and Quantitative Proteomics at High Throughput."],"pmcid":["PMC12809002"],"funding_grant_id":["492697668","031L0220","TRR 186","EXC3118/1-533770413","161L0221","ERC-SyG-2020951475"],"pubmed_authors":["Demichev V","Sinn LR","Chelur A","Tate S","Alvarez CP","Batruch I","Pribil P","Ludwig D","Castro-Perez J","Ralser M","Wang Z","Messner CB"],"additional_accession":[]},"is_claimable":false,"name":"Performance Characteristics of Zeno Trap Scanning DIA for Sensitive and Quantitative Proteomics at High Throughput.","description":"Proteomic experiments, particularly those addressing dynamic proteome properties, time series, or genetic diversity, require the analysis of large sample numbers. Despite significant advancements in proteomic technologies in recent years, further improvements are needed to accelerate measurement and enhance proteome coverage and quantitative performance. Previously, we demonstrated that incorporating a scanning MS2 dimension into data-independent acquisition (DIA) methods (Scanning SWATH, or more generally scanning DIA), but also ion trapping, improves analytical depth and quantitative performance, especially in proteomic methods using fast chromatography. Here, we evaluate the scanning DIA approach combined with ion trapping via the Zeno trap in a method termed ZT Scan DIA, using a ZenoTO","dates":{"release":"2026-01-01T00:00:00Z","publication":"2026 Jan","modification":"2026-06-06T16:05:09.548Z","creation":"2026-06-02T03:12:02.114Z"},"accession":"S-EPMC12809002","cross_references":{"pubmed":["41452136"],"doi":["10.1002/pmic.70093"]}}