{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Karlsson O"],"funding":["Swedish Government Initiative for Strategic Research Areas","Olle Engqvists stiftelse","Chan Zuckerberg Initiative DAF","Swedish Government Initiative for Strategic Research Areas (MultiPark & StemTherapy)","Barncancerfonden","Swedish Brain Foundation","Swedish Research Council","Swedish research council","Cancerfonden","Swedish Society for Medical Research"],"pagination":["gkag100"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC12873604"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["54(4)"],"pubmed_abstract":["Heterochromatin is characterized by an inaccessibility to the transcriptional machinery and is associated with the histone mark H3K9me3. However, studying the functional consequences of heterochromatin loss in human cells has been challenging. Here, we used CRISPRi-mediated silencing of the histone methyltransferase SETDB1 to remove H3K9me3 heterochromatin in human neural progenitor cells. Despite a major loss of H3K9me3 peaks resulting in genome-wide reorganization of heterochromatin domains, silencing of SETDB1 had a limited effect on cell viability. Cells remained proliferative and expressed appropriate marker genes. We found that a key event following the loss of SETDB1-mediated H3K9me3 was the expression of evolutionarily young L1 retrotransposons. Derepression of L1s was associated w"],"journal":["Nucleic acids research"],"pubmed_title":["Loss of SETDB1-mediated H3K9me3 in human neural progenitor cells leads to transcriptional activation of L1 retrotransposons."],"pmcid":["PMC12873604"],"funding_grant_id":["2021-03494","S19-0100","222185","218-0090","2022-00673","FO2023-0232","2023-331773"],"pubmed_authors":["Karlsson O","Horvath V","Johansson PA","Douse CH","Jakobsson J","Pandiloski N","Adami A","Garza R","Johansson JG"],"additional_accession":[]},"is_claimable":false,"name":"Loss of SETDB1-mediated H3K9me3 in human neural progenitor cells leads to transcriptional activation of L1 retrotransposons.","description":"Heterochromatin is characterized by an inaccessibility to the transcriptional machinery and is associated with the histone mark H3K9me3. However, studying the functional consequences of heterochromatin loss in human cells has been challenging. Here, we used CRISPRi-mediated silencing of the histone methyltransferase SETDB1 to remove H3K9me3 heterochromatin in human neural progenitor cells. Despite a major loss of H3K9me3 peaks resulting in genome-wide reorganization of heterochromatin domains, silencing of SETDB1 had a limited effect on cell viability. Cells remained proliferative and expressed appropriate marker genes. We found that a key event following the loss of SETDB1-mediated H3K9me3 was the expression of evolutionarily young L1 retrotransposons. Derepression of L1s was associated w","dates":{"release":"2026-01-01T00:00:00Z","publication":"2026 Feb","modification":"2026-07-15T13:13:16.788Z","creation":"2026-07-05T03:08:12.253Z"},"accession":"S-EPMC12873604","cross_references":{"pubmed":["41641702"],"doi":["10.1093/nar/gkag100"]}}