{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Brotherton P"],"funding":["Natural Environment Research Council","Wellcome Trust"],"pagination":["5717-28"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC2034480"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["35(17)"],"pubmed_abstract":["Ancient DNA (aDNA) research has long depended on the power of PCR to amplify trace amounts of surviving genetic material from preserved specimens. While PCR permits specific loci to be targeted and amplified, in many ways it can be intrinsically unsuited to damaged and degraded aDNA templates. PCR amplification of aDNA can produce highly-skewed distributions with significant contributions from miscoding lesion damage and non-authentic sequence artefacts. As traditional PCR-based approaches have been unable to fully resolve the molecular nature of aDNA damage over many years, we have developed a novel single primer extension (SPEX)-based approach to generate more accurate sequence information. SPEX targets selected template strands at defined loci and can generate a quantifiable redundancy "],"journal":["Nucleic acids research"],"pubmed_title":["Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions."],"pmcid":["PMC2034480"],"funding_grant_id":["NER/T/S/2002/00472"],"pubmed_authors":["Sanchez JJ","Austin J","Endicott P","Beaumont M","Barnett R","Cooper A","Brotherton P"],"additional_accession":[]},"is_claimable":false,"name":"Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions.","description":"Ancient DNA (aDNA) research has long depended on the power of PCR to amplify trace amounts of surviving genetic material from preserved specimens. While PCR permits specific loci to be targeted and amplified, in many ways it can be intrinsically unsuited to damaged and degraded aDNA templates. PCR amplification of aDNA can produce highly-skewed distributions with significant contributions from miscoding lesion damage and non-authentic sequence artefacts. As traditional PCR-based approaches have been unable to fully resolve the molecular nature of aDNA damage over many years, we have developed a novel single primer extension (SPEX)-based approach to generate more accurate sequence information. SPEX targets selected template strands at defined loci and can generate a quantifiable redundancy ","dates":{"release":"2007-01-01T00:00:00Z","publication":"2007","modification":"2026-05-04T02:19:24.475Z","creation":"2019-03-27T02:21:44Z"},"accession":"S-EPMC2034480","cross_references":{"pubmed":["17715147"],"doi":["10.1093/nar/gkm588"]}}