{"database":"biostudies-literature","file_versions":[],"scores":{"citationCount":0,"reanalysisCount":0,"viewCount":57,"searchCount":0},"additional":{"submitter":["Berthet N"],"funding":["NIAID NIH HHS"],"pagination":["e15243"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC3004854"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["5(12)"],"pubmed_abstract":["We describe the benefit of using reconstructed ancestral sequences (RAS) on resequencing microarrays for rapid pathogen identification, with Enterobacteriaceae rpoB sequences as a model. Our results demonstrate a sharp improvement of call rate and accuracy when using RASs as compared to extant sequences. This improvement was attributed to the lower sequence divergence of RASs, which also expanded the sequence space covered by the microarray. Extension of this novel microarray design strategy to viruses, antimicrobial resistance elements or toxins is straightforward."],"journal":["PloS one"],"pubmed_title":["Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays."],"pmcid":["PMC3004854"],"funding_grant_id":["UCI AI062613","UC1 AI062613"],"pubmed_authors":["Brisse S","Manuguerra JC","Cole ST","Kennedy GC","Deletoile A","Berthet N","Passet V"],"view_count":["57"],"additional_accession":[]},"is_claimable":false,"name":"Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays.","description":"We describe the benefit of using reconstructed ancestral sequences (RAS) on resequencing microarrays for rapid pathogen identification, with Enterobacteriaceae rpoB sequences as a model. Our results demonstrate a sharp improvement of call rate and accuracy when using RASs as compared to extant sequences. This improvement was attributed to the lower sequence divergence of RASs, which also expanded the sequence space covered by the microarray. Extension of this novel microarray design strategy to viruses, antimicrobial resistance elements or toxins is straightforward.","dates":{"release":"2010-01-01T00:00:00Z","publication":"2010 Dec","modification":"2020-11-20T09:36:29Z","creation":"2019-03-26T23:09:12Z"},"accession":"S-EPMC3004854","cross_references":{"pubmed":["21187950"],"doi":["10.1371/journal.pone.0015243"]}}