biostudies-literatureRosenbloom KRHoward Hughes Medical InstituteNHGRI NIH HHSD912-7https://www.ebi.ac.uk/biostudies/studies/S-EPMC3245183biostudies-literatureUnknown40(Database issue)The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional annotations of the human genome. The past year has brought the ENCODE compendium of functional elements to critical mass, with a diverse set of 27 biochemical assays now covering 200 distinct human cell types. Within the mouse genome, which has been under study by ENCODE groups for the past 2 years, 37 cell types have been assayed. Over 2000 individual experiments have been completed and submitted to the Data Coordination Center for public use. UCSC makes this data available on the quality-reviewed public Genome Browser (http://genome.ucsc.edu) and on an early-access Preview Browser (http://genome-preview.ucsc.edu). Visual browsing, data mining and download of raw and processed data files are all supported. An ENCODE portal (http://encodeproject.org) provides specialized tools and information about the ENCODE data sets.Nucleic acids researchENCODE whole-genome data in the UCSC Genome Browser: update 2012.PMC32451833P41HG002371-10S15U41HG004568-043U41HG004568-03S15P41HG002371-10Wong MCDreszer TRLearned KGravell RCRaney BJKuhn RMSloan CAHarte RADiekhans MPohl ACline MSGoldman MHinrichs ASKent WJMaddren MClawson HFujita PARhead BRosenbloom KRHaussler DKirkup VMKarolchik DZweig ASMeyer LRBarber GPMalladi VSLong JCfalseENCODE whole-genome data in the UCSC Genome Browser: update 2012.The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional annotations of the human genome. The past year has brought the ENCODE compendium of functional elements to critical mass, with a diverse set of 27 biochemical assays now covering 200 distinct human cell types. Within the mouse genome, which has been under study by ENCODE groups for the past 2 years, 37 cell types have been assayed. Over 2000 individual experiments have been completed and submitted to the Data Coordination Center for public use. UCSC makes this data available on the quality-reviewed public Genome Browser (http://genome.ucsc.edu) and on an early-access Preview Browser (http://genome-preview.ucsc.edu). Visual browsing, data mining and download of raw and processed data files are all supported. An ENCODE portal (http://encodeproject.org) provides specialized tools and information about the ENCODE data sets.2012-01-01T00:00:00Z2012 Jan2024-10-18T00:48:16.536Z2019-03-27T00:47:18ZS-EPMC32451832207599810.1093/nar/gkr1012