{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["9(7)"],"submitter":["Egekwu N"],"pubmed_abstract":["Illumina and 454 pyrosequencing were used to characterize genes from the synganglion of female Ixodes scapularis. GO term searching success for biological processes was similar for samples sequenced by both methods. However, for molecular processes, it was more successful for the Illumina samples than for 454 samples. Functional assignments of transcripts predicting neuropeptides, neuropeptide receptors, neurotransmitter receptors and other genes of interest was done, supported by strong e-values (<-6), and high consensus sequence alignments. Transcripts predicting 15 putative neuropeptide prepropeptides ((allatostatin, allatotropin, bursicon α, corticotropin releasing factor (CRF), CRF-binding protein, eclosion hormone, FMRFamide, glycoprotein A, insulin-like peptide, ion transport peptid"],"journal":["PloS one"],"pagination":["e102667"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC4116169"],"repository":["biostudies-literature"],"pubmed_title":["Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems."],"pmcid":["PMC4116169"],"pubmed_authors":["Sonenshine DE","Roe RM","Bissinger BW","Egekwu N"],"additional_accession":[]},"is_claimable":false,"name":"Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems.","description":"Illumina and 454 pyrosequencing were used to characterize genes from the synganglion of female Ixodes scapularis. GO term searching success for biological processes was similar for samples sequenced by both methods. However, for molecular processes, it was more successful for the Illumina samples than for 454 samples. Functional assignments of transcripts predicting neuropeptides, neuropeptide receptors, neurotransmitter receptors and other genes of interest was done, supported by strong e-values (<-6), and high consensus sequence alignments. Transcripts predicting 15 putative neuropeptide prepropeptides ((allatostatin, allatotropin, bursicon α, corticotropin releasing factor (CRF), CRF-binding protein, eclosion hormone, FMRFamide, glycoprotein A, insulin-like peptide, ion transport peptid","dates":{"release":"2014-01-01T00:00:00Z","publication":"2014","modification":"2026-04-18T17:19:10.312Z","creation":"2019-03-26T23:26:40Z"},"accession":"S-EPMC4116169","cross_references":{"pubmed":["25075967"],"doi":["10.1371/journal.pone.0102667"]}}