biostudies-literature00550Swarts DCIntramural NIH HHSDutch Research Council (NWO)NCI NIH HHSNIGMS NIH HHS743-53https://www.ebi.ac.uk/biostudies/studies/S-EPMC4691850biostudies-literatureUnknown21(9)Argonaute proteins are conserved throughout all domains of life. Recently characterized prokaryotic Argonaute proteins (pAgos) participate in host defense by DNA interference, whereas eukaryotic Argonaute proteins (eAgos) control a wide range of processes by RNA interference. Here we review molecular mechanisms of guide and target binding by Argonaute proteins, and describe how the conformational changes induced by target binding lead to target cleavage. On the basis of structural comparisons and phylogenetic analyses of pAgos and eAgos, we reconstruct the evolutionary journey of the Argonaute proteins through the three domains of life and discuss how different structural features of pAgos and eAgos relate to their distinct physiological roles.Nature structural & molecular biologyThe evolutionary journey of Argonaute proteins.PMC4691850R01 GM104962845.10.003P30 CA008748TR01 GM104962Patel DJSwarts DCNakanishi KKetting RFMakarova KKoonin EVWang Yvan der Oost J55falseThe evolutionary journey of Argonaute proteins.Argonaute proteins are conserved throughout all domains of life. Recently characterized prokaryotic Argonaute proteins (pAgos) participate in host defense by DNA interference, whereas eukaryotic Argonaute proteins (eAgos) control a wide range of processes by RNA interference. Here we review molecular mechanisms of guide and target binding by Argonaute proteins, and describe how the conformational changes induced by target binding lead to target cleavage. On the basis of structural comparisons and phylogenetic analyses of pAgos and eAgos, we reconstruct the evolutionary journey of the Argonaute proteins through the three domains of life and discuss how different structural features of pAgos and eAgos relate to their distinct physiological roles.2014-01-01T00:00:00Z2014 Sep2024-11-08T14:56:46.167Z2019-03-27T02:05:49ZS-EPMC46918502519226310.1038/nsmb.2879