{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Ding D"],"funding":["National Natural Science Foundation of China"],"pagination":["530"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC4837345"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["7"],"pubmed_abstract":["Shewanella oneidensis MR-1 is capable of extracellular electron transfer (EET) and hence has attracted considerable attention. The EET pathways mainly consist of c-type cytochromes, along with some other proteins involved in electron transfer processes. By whole genome study and protein interactions inquisition, we constructed a large-scale electron transfer network containing 2276 interactions among 454 electron transfer related proteins in S. oneidensis MR-1. Using the k-shell decomposition method, we identified and analyzed distinct parts of the electron transfer network. We found that there was a negative correlation between the k s (k-shell values) and the average DR_100 (disordered regions per 100 amino acids) in every shell, which suggested that disordered regions of proteins played"],"journal":["Frontiers in microbiology"],"pubmed_title":["K-shell Analysis Reveals Distinct Functional Parts in an Electron Transfer Network and Its Implications for Extracellular Electron Transfer."],"pmcid":["PMC4837345"],"funding_grant_id":["61472078"],"pubmed_authors":["Shu C","Ding D","Sun X","Li L"],"additional_accession":[]},"is_claimable":false,"name":"K-shell Analysis Reveals Distinct Functional Parts in an Electron Transfer Network and Its Implications for Extracellular Electron Transfer.","description":"Shewanella oneidensis MR-1 is capable of extracellular electron transfer (EET) and hence has attracted considerable attention. The EET pathways mainly consist of c-type cytochromes, along with some other proteins involved in electron transfer processes. By whole genome study and protein interactions inquisition, we constructed a large-scale electron transfer network containing 2276 interactions among 454 electron transfer related proteins in S. oneidensis MR-1. Using the k-shell decomposition method, we identified and analyzed distinct parts of the electron transfer network. We found that there was a negative correlation between the k s (k-shell values) and the average DR_100 (disordered regions per 100 amino acids) in every shell, which suggested that disordered regions of proteins played","dates":{"release":"2016-01-01T00:00:00Z","publication":"2016","modification":"2026-04-08T16:38:03.035Z","creation":"2019-03-27T02:11:59Z"},"accession":"S-EPMC4837345","cross_references":{"pubmed":["27148219"],"doi":["10.3389/fmicb.2016.00530"]}}