{"database":"biostudies-literature","file_versions":[],"scores":{"citationCount":0,"reanalysisCount":0,"viewCount":44,"searchCount":0},"additional":{"submitter":["Zhou H"],"funding":["the Importation and Development of High-Caliber Talents Project of Beijing Municipal Institutions","Beijing Natural Science Foundation and Scientific Research Key Program of Beijing Municipal Commission of Education","the National Natural Science Foundation of China"],"pagination":["e0154312"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC4854424"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["11(5)"],"pubmed_abstract":["WRKY proteins play important regulatory roles in plant developmental processes such as senescence, trichome initiation and embryo morphogenesis. In strawberry, only FaWRKY1 (Fragaria × ananassa) has been characterized, leaving numerous WRKY genes to be identified and their function characterized. The publication of the draft genome sequence of the strawberry genome allowed us to conduct a genome-wide search for WRKY proteins in Fragaria vesca, and to compare the identified proteins with their homologs in model plants. Fifty-nine FvWRKY genes were identified and annotated from the F. vesca genome. Detailed analysis, including gene classification, annotation, phylogenetic evaluation, conserved motif determination and expression profiling, based on RNA-seq data, were performed on all members of the family. Additionally, the expression patterns of the WRKY genes in different fruit developmental stages were further investigated using qRT-PCR, to provide a foundation for further comparative genomics and functional studies of this important class of transcriptional regulators in strawberry."],"journal":["PloS one"],"pubmed_title":["Genome-Wide Analysis of the Expression of WRKY Family Genes in Different Developmental Stages of Wild Strawberry (Fragaria vesca) Fruit."],"pmcid":["PMC4854424"],"funding_grant_id":["31370323","KZ20130020018","CIT&TCD201404098"],"pubmed_authors":["Li Y","Qin L","Xing Y","Shen Y","Zhou H","Ren S","Zhang Q"],"view_count":["44"],"additional_accession":[]},"is_claimable":false,"name":"Genome-Wide Analysis of the Expression of WRKY Family Genes in Different Developmental Stages of Wild Strawberry (Fragaria vesca) Fruit.","description":"WRKY proteins play important regulatory roles in plant developmental processes such as senescence, trichome initiation and embryo morphogenesis. In strawberry, only FaWRKY1 (Fragaria × ananassa) has been characterized, leaving numerous WRKY genes to be identified and their function characterized. The publication of the draft genome sequence of the strawberry genome allowed us to conduct a genome-wide search for WRKY proteins in Fragaria vesca, and to compare the identified proteins with their homologs in model plants. Fifty-nine FvWRKY genes were identified and annotated from the F. vesca genome. Detailed analysis, including gene classification, annotation, phylogenetic evaluation, conserved motif determination and expression profiling, based on RNA-seq data, were performed on all members of the family. Additionally, the expression patterns of the WRKY genes in different fruit developmental stages were further investigated using qRT-PCR, to provide a foundation for further comparative genomics and functional studies of this important class of transcriptional regulators in strawberry.","dates":{"release":"2016-01-01T00:00:00Z","publication":"2016","modification":"2024-11-20T21:47:07.111Z","creation":"2019-03-26T22:54:48Z"},"accession":"S-EPMC4854424","cross_references":{"pubmed":["27138272"],"doi":["10.1371/journal.pone.0154312"]}}