{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["5(7)"],"submitter":["Koerfer J"],"funding":["German Bundesministerium für Bildung und Forschung (BMBF)"],"pubmed_abstract":["Gastric and esophagogastric junction cancers are heterogeneous and aggressive tumors with an unpredictable response to cytotoxic treatment. New methods allowing for the analysis of drug resistance are needed. Here, we describe a novel technique by which human tumor specimens can be cultured ex vivo, preserving parts of the natural cancer microenvironment. Using a tissue chopper, fresh surgical tissue samples were cut in 400 μm slices and cultivated in 6-well plates for up to 6 days. The slices were processed for routine histopathology and immunohistochemistry. Cytokeratin stains (CK8, AE1/3) were applied for determining tumor cellularity, Ki-67 for proliferation, and cleaved caspase-3 staining for apoptosis. The slices were analyzed under naive conditions and following 2-4 days in vitro ex"],"journal":["Cancer medicine"],"pagination":["1444-53"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC4944870"],"repository":["biostudies-literature"],"pubmed_title":["Organotypic slice cultures of human gastric and esophagogastric junction cancer."],"pmcid":["PMC4944870"],"pubmed_authors":["Weimann A","Wittekind C","Aigner A","Merz F","Moebius C","Eckmann C","Schumacher G","Geister D","Bechmann I","Koerfer J","Lordick F","Kallendrusch S","Kassahun WT","Gaßler N","Schopow N","Wiechmann V","Kubick C"],"additional_accession":[]},"is_claimable":false,"name":"Organotypic slice cultures of human gastric and esophagogastric junction cancer.","description":"Gastric and esophagogastric junction cancers are heterogeneous and aggressive tumors with an unpredictable response to cytotoxic treatment. New methods allowing for the analysis of drug resistance are needed. Here, we describe a novel technique by which human tumor specimens can be cultured ex vivo, preserving parts of the natural cancer microenvironment. Using a tissue chopper, fresh surgical tissue samples were cut in 400 μm slices and cultivated in 6-well plates for up to 6 days. The slices were processed for routine histopathology and immunohistochemistry. Cytokeratin stains (CK8, AE1/3) were applied for determining tumor cellularity, Ki-67 for proliferation, and cleaved caspase-3 staining for apoptosis. The slices were analyzed under naive conditions and following 2-4 days in vitro ex","dates":{"release":"2016-01-01T00:00:00Z","publication":"2016 Jul","modification":"2025-04-18T18:10:09.307Z","creation":"2019-03-27T02:18:22Z"},"accession":"S-EPMC4944870","cross_references":{"pubmed":["27073068"],"doi":["10.1002/cam4.720"]}}