<HashMap><database>biostudies-literature</database><scores/><additional><submitter>Harish A</submitter><funding>Biotechnology and Biological Sciences Research Council</funding><pagination>2474-81</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC5010908</full_dataset_link><repository>biostudies-literature</repository><omics_type>Unknown</omics_type><volume>8(8)</volume><pubmed_abstract>The evolutionary origins of viruses according to marker gene phylogenies, as well as their relationships to the ancestors of host cells remains unclear. In a recent article Nasir and Caetano-Anollés reported that their genome-scale phylogenetic analyses based on genomic composition of protein structural-domains identify an ancient origin of the "viral supergroup" (Nasir et al. 2015. A phylogenomic data-driven exploration of viral origins and evolution. Sci Adv. 1(8):e1500527.). It suggests that viruses and host cells evolved independently from a universal common ancestor. Examination of their data and phylogenetic methods indicates that systematic errors likely affected the results. Reanalysis of the data with additional tests shows that small-genome attraction artifacts distort their phyl</pubmed_abstract><journal>Genome biology and evolution</journal><pubmed_title>Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?</pubmed_title><pmcid>PMC5010908</pmcid><funding_grant_id>BB/G022771/1</funding_grant_id><pubmed_authors>Harish A</pubmed_authors><pubmed_authors>Kurland C</pubmed_authors><pubmed_authors>Abroi A</pubmed_authors><pubmed_authors>Gough J</pubmed_authors></additional><is_claimable>false</is_claimable><name>Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?</name><description>The evolutionary origins of viruses according to marker gene phylogenies, as well as their relationships to the ancestors of host cells remains unclear. In a recent article Nasir and Caetano-Anollés reported that their genome-scale phylogenetic analyses based on genomic composition of protein structural-domains identify an ancient origin of the "viral supergroup" (Nasir et al. 2015. A phylogenomic data-driven exploration of viral origins and evolution. Sci Adv. 1(8):e1500527.). It suggests that viruses and host cells evolved independently from a universal common ancestor. Examination of their data and phylogenetic methods indicates that systematic errors likely affected the results. Reanalysis of the data with additional tests shows that small-genome attraction artifacts distort their phyl</description><dates><release>2016-01-01T00:00:00Z</release><publication>2016 Aug</publication><modification>2026-05-29T20:36:06.353Z</modification><creation>2019-03-27T02:23:28Z</creation></dates><accession>S-EPMC5010908</accession><cross_references><pubmed>27497315</pubmed><doi>10.1093/gbe/evw175</doi></cross_references></HashMap>