{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["129(10)"],"submitter":["Clarke WE"],"pubmed_abstract":["<h4>Key message</h4>The Brassica napus Illumina array provides genome-wide markers linked to the available genome sequence, a significant tool for genetic analyses of the allotetraploid B. napus and its progenitor diploid genomes. A high-density single nucleotide polymorphism (SNP) Illumina Infinium array, containing 52,157 markers, was developed for the allotetraploid Brassica napus. A stringent selection process employing the short probe sequence for each SNP assay was used to limit the majority of the selected markers to those represented a minimum number of times across the highly replicated genome. As a result approximately 60 % of the SNP assays display genome-specificity, resolving as three clearly separated clusters (AA, AB, and BB) when tested with a diverse range of B. napus mate"],"journal":["TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik"],"pagination":["1887-99"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC5025514"],"repository":["biostudies-literature"],"pubmed_title":["A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome."],"pmcid":["PMC5025514"],"pubmed_authors":["Wieseke R","Sidebottom C","Pauquet J","Iniguez-Luy F","Stich B","Parkin IA","Clarke WE","Laga B","Ganal MW","Batley J","Lawley CT","Snowdon RJ","Li R","Sharpe AG","Plieske J","Higgins EE","Cheung W","Edwards D","Dyrszka E","Rae S","Meng J","Khedikar Y"],"additional_accession":[]},"is_claimable":false,"name":"A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome.","description":"<h4>Key message</h4>The Brassica napus Illumina array provides genome-wide markers linked to the available genome sequence, a significant tool for genetic analyses of the allotetraploid B. napus and its progenitor diploid genomes. A high-density single nucleotide polymorphism (SNP) Illumina Infinium array, containing 52,157 markers, was developed for the allotetraploid Brassica napus. A stringent selection process employing the short probe sequence for each SNP assay was used to limit the majority of the selected markers to those represented a minimum number of times across the highly replicated genome. As a result approximately 60 % of the SNP assays display genome-specificity, resolving as three clearly separated clusters (AA, AB, and BB) when tested with a diverse range of B. napus mate","dates":{"release":"2016-01-01T00:00:00Z","publication":"2016 Oct","modification":"2025-05-29T21:27:05.662Z","creation":"2025-05-29T21:27:05.662Z"},"accession":"S-EPMC5025514","cross_references":{"pubmed":["27364915"],"doi":["10.1007/s00122-016-2746-7"]}}