<HashMap><database>biostudies-literature</database><scores/><additional><omics_type>Unknown</omics_type><volume>45(3)</volume><submitter>Poudyal RR</submitter><pubmed_abstract>Ribozymes can catalyze phosphoryl or nucleotidyl transfer onto ribose hydroxyls of RNA chains. We report a single ribozyme that performs both reactions, with a nucleobase serving as initial acceptor moiety. This unprecedented combined reaction was revealed while investigating potential contributions of ribose hydroxyls to catalysis by kinase ribozyme K28. For a 58nt, cis-acting form of K28, each nucleotide could be replaced with the corresponding 2΄F analog without loss of activity, indicating that no particular 2΄OH is specifically required. Reactivities of two-stranded K28 variants with oligodeoxynucleotide acceptor strands devoid of any 2΄OH moieties implicate modification on an internal guanosine N-2, rather than a ribose hydroxyl. Product mass suggests formation of a GDP(S) adduct alo</pubmed_abstract><journal>Nucleic acids research</journal><pagination>1345-1354</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC5388400</full_dataset_link><repository>biostudies-literature</repository><pubmed_title>Nucleobase modification by an RNA enzyme.</pubmed_title><pmcid>PMC5388400</pmcid><pubmed_authors>Poudyal RR</pubmed_authors><pubmed_authors>Callaway MK</pubmed_authors><pubmed_authors>Nguyen PD</pubmed_authors><pubmed_authors>Krishnamurthy R</pubmed_authors><pubmed_authors>Burke DH</pubmed_authors><pubmed_authors>Lokugamage MP</pubmed_authors><pubmed_authors>Gavette JV</pubmed_authors></additional><is_claimable>false</is_claimable><name>Nucleobase modification by an RNA enzyme.</name><description>Ribozymes can catalyze phosphoryl or nucleotidyl transfer onto ribose hydroxyls of RNA chains. We report a single ribozyme that performs both reactions, with a nucleobase serving as initial acceptor moiety. This unprecedented combined reaction was revealed while investigating potential contributions of ribose hydroxyls to catalysis by kinase ribozyme K28. For a 58nt, cis-acting form of K28, each nucleotide could be replaced with the corresponding 2΄F analog without loss of activity, indicating that no particular 2΄OH is specifically required. Reactivities of two-stranded K28 variants with oligodeoxynucleotide acceptor strands devoid of any 2΄OH moieties implicate modification on an internal guanosine N-2, rather than a ribose hydroxyl. Product mass suggests formation of a GDP(S) adduct alo</description><dates><release>2017-01-01T00:00:00Z</release><publication>2017 Feb</publication><modification>2025-04-04T14:32:51.033Z</modification><creation>2019-03-27T02:41:03Z</creation></dates><accession>S-EPMC5388400</accession><cross_references><pubmed>28180302</pubmed><doi>10.1093/nar/gkw1199</doi></cross_references></HashMap>