{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["7(1)"],"submitter":["Ji X"],"pubmed_abstract":["The establishment of a collaborative network of transcription factors (TFs) followed by decomposition and then construction of subnetworks is an effective way to obtain sets of collaborative TFs; each set controls a biological process or a complex trait. We previously developed eight gene association methods for genome-wide coexpression analysis between each TF and all other genomic genes and then constructing collaborative networks of TFs but only one algorithm, called Triple-Link Algorithm, for building collaborative subnetworks. In this study, we developed two more algorithms, Single Seed-Growing Algorithm (SSGA) and Multi-Seed Growing Algorithm (MSGA), for building collaborative subnetworks of TFs by identifying the fully-linked triple-node seeds from a decomposed collaborative netwo"],"journal":["Scientific reports"],"pagination":["1446"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC5431152"],"repository":["biostudies-literature"],"pubmed_title":["SSGA and MSGA: two seed-growing algorithms for constructing collaborative subnetworks."],"pmcid":["PMC5431152"],"pubmed_authors":["Li JC","Ji X","Wei H","Chen S","Wei Z","Deng W"],"additional_accession":[]},"is_claimable":false,"name":"SSGA and MSGA: two seed-growing algorithms for constructing collaborative subnetworks.","description":"The establishment of a collaborative network of transcription factors (TFs) followed by decomposition and then construction of subnetworks is an effective way to obtain sets of collaborative TFs; each set controls a biological process or a complex trait. We previously developed eight gene association methods for genome-wide coexpression analysis between each TF and all other genomic genes and then constructing collaborative networks of TFs but only one algorithm, called Triple-Link Algorithm, for building collaborative subnetworks. In this study, we developed two more algorithms, Single Seed-Growing Algorithm (SSGA) and Multi-Seed Growing Algorithm (MSGA), for building collaborative subnetworks of TFs by identifying the fully-linked triple-node seeds from a decomposed collaborative netwo","dates":{"release":"2017-01-01T00:00:00Z","publication":"2017 May","modification":"2026-05-04T17:42:09.172Z","creation":"2019-03-27T02:43:35Z"},"accession":"S-EPMC5431152","cross_references":{"pubmed":["28469138"],"doi":["10.1038/s41598-017-01556-z"]}}