{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["LeBlanc VG"],"funding":["VCHRI Mentored Scientist Award","CIHR Vanier Canada Graduate Scholarship","BC Cancer Foundation","University of British Columbia","Canadian Institutes of Health Research (CIHR) Canada Graduate Scholarship Master's Award","BC Cancer Agency","Killam Doctoral Scholarship","BrainCare BC","Canada Research Chairs program","Canadian Institutes of Health Research","CIHR"],"pagination":["206-220"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC5485162"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["242(2)"],"pubmed_abstract":["CIC encodes a transcriptional repressor, capicua (CIC), whose disrupted activity appears to be involved in several cancer types, including type I low-grade gliomas (LGGs) and stomach adenocarcinomas (STADs). To explore human CIC's transcriptional network in an isogenic background, we developed novel isogenic CIC knockout cell lines as model systems, and used these in transcriptome analyses to study the consequences of CIC loss. We also compared our results with analyses of transcriptome data from TCGA for type I LGGs and STADs. We identified 39 candidate targets of CIC transcriptional regulation, and confirmed seven of these as direct targets. We showed that, although many CIC targets appear to be context-specific, the effects of CIC loss converge on the dysregulation of similar biological"],"journal":["The Journal of pathology"],"pubmed_title":["Comparative transcriptome analysis of isogenic cell line models and primary cancers links capicua (CIC) loss to activation of the MAPK signalling cascade."],"pmcid":["PMC5485162"],"funding_grant_id":["CIHR; FDN-143288"],"pubmed_authors":["Lee MH","LeBlanc VG","Yip S","Marra MA","Chan SY","Chittaranjan S","Firme M","Song J"],"additional_accession":[]},"is_claimable":false,"name":"Comparative transcriptome analysis of isogenic cell line models and primary cancers links capicua (CIC) loss to activation of the MAPK signalling cascade.","description":"CIC encodes a transcriptional repressor, capicua (CIC), whose disrupted activity appears to be involved in several cancer types, including type I low-grade gliomas (LGGs) and stomach adenocarcinomas (STADs). To explore human CIC's transcriptional network in an isogenic background, we developed novel isogenic CIC knockout cell lines as model systems, and used these in transcriptome analyses to study the consequences of CIC loss. We also compared our results with analyses of transcriptome data from TCGA for type I LGGs and STADs. We identified 39 candidate targets of CIC transcriptional regulation, and confirmed seven of these as direct targets. We showed that, although many CIC targets appear to be context-specific, the effects of CIC loss converge on the dysregulation of similar biological","dates":{"release":"2017-01-01T00:00:00Z","publication":"2017 Jun","modification":"2026-05-01T09:07:03.166Z","creation":"2025-05-18T12:52:12.2Z"},"accession":"S-EPMC5485162","cross_references":{"pubmed":["28295365"],"doi":["10.1002/path.4894"]}}