{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Martin LB"],"funding":["National Institutes of Health","Cooperative State Research, Education, and Extension Service","NIH HHS","National Science Foundation"],"pagination":["2081-94"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC5499159"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["16(15-16)"],"pubmed_abstract":["We describe here the use of label-free wide selected-ion monitoring data-independent acquisition (WiSIM-DIA) to identify proteins that are involved in the formation of tomato (Solanum lycopersicum) fruit cuticles and that are regulated by the transcription factor CUTIN DEFICIENT2 (CD2). A spectral library consisting of 11 753 unique peptides, corresponding to 2338 tomato protein groups, was used and the DIA analysis was performed at the MS1 level utilizing narrow mass windows for extraction with Skyline 2.6 software. We identified a total of 1140 proteins, 67 of which had expression levels that differed significantly between the cd2 tomato mutant and the wild-type cultivar M82. Differentially expressed proteins including a key protein involved in cutin biosynthesis, were selected for valid"],"journal":["Proteomics"],"pubmed_title":["Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor."],"pmcid":["PMC5499159"],"funding_grant_id":["S10 OD017992","1S10 OD017992‐01"],"pubmed_authors":["Martin LB","Muratore-Schroeder TL","Yang Y","Nicklay JJ","Anderson ET","Rose JK","Zhang S","Sherwood RW","Thannhauser TW"],"additional_accession":[]},"is_claimable":false,"name":"Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor.","description":"We describe here the use of label-free wide selected-ion monitoring data-independent acquisition (WiSIM-DIA) to identify proteins that are involved in the formation of tomato (Solanum lycopersicum) fruit cuticles and that are regulated by the transcription factor CUTIN DEFICIENT2 (CD2). A spectral library consisting of 11 753 unique peptides, corresponding to 2338 tomato protein groups, was used and the DIA analysis was performed at the MS1 level utilizing narrow mass windows for extraction with Skyline 2.6 software. We identified a total of 1140 proteins, 67 of which had expression levels that differed significantly between the cd2 tomato mutant and the wild-type cultivar M82. Differentially expressed proteins including a key protein involved in cutin biosynthesis, were selected for valid","dates":{"release":"2016-01-01T00:00:00Z","publication":"2016 Aug","modification":"2025-04-19T22:43:48.071Z","creation":"2019-03-27T02:49:35Z"},"accession":"S-EPMC5499159","cross_references":{"pubmed":["27089858"],"doi":["10.1002/pmic.201500450"]}}