{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["9(1)"],"submitter":["Stelloo S"],"pubmed_abstract":["The Androgen Receptor (AR) is the key-driving transcription factor in prostate cancer, tightly controlled by epigenetic regulation. To date, most epigenetic profiling has been performed in cell lines or limited tissue samples. Here, to comprehensively study the epigenetic landscape, we perform RNA-seq with ChIP-seq for AR and histone modification marks (H3K27ac, H3K4me3, H3K27me3) in 100 primary prostate carcinomas. Integrative molecular subtyping of the five data streams revealed three major subtypes of which two were clearly TMPRSS2-ERG dictated. Importantly, we identify a third subtype with low chromatin binding and activity of AR, but with high activity of FGF and WNT signaling. While positive for neuroendocrine-hallmark genes, these tumors were copy number-neutral with low mutational "],"journal":["Nature communications"],"pagination":["4900"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC6249266"],"repository":["biostudies-literature"],"pubmed_title":["Integrative epigenetic taxonomy of primary prostate cancer."],"pmcid":["PMC6249266"],"pubmed_authors":["Lobo J","Henrique R","Stelloo S","Nevedomskaya E","Bergman AM","Feng FY","Zwart W","Peeper DS","Schuurman K","Wessels LFA","Kim Y","Krijgsman O","Valle-Encinas E","Jeronimo C","Chang SL"],"additional_accession":[]},"is_claimable":false,"name":"Integrative epigenetic taxonomy of primary prostate cancer.","description":"The Androgen Receptor (AR) is the key-driving transcription factor in prostate cancer, tightly controlled by epigenetic regulation. To date, most epigenetic profiling has been performed in cell lines or limited tissue samples. Here, to comprehensively study the epigenetic landscape, we perform RNA-seq with ChIP-seq for AR and histone modification marks (H3K27ac, H3K4me3, H3K27me3) in 100 primary prostate carcinomas. Integrative molecular subtyping of the five data streams revealed three major subtypes of which two were clearly TMPRSS2-ERG dictated. Importantly, we identify a third subtype with low chromatin binding and activity of AR, but with high activity of FGF and WNT signaling. While positive for neuroendocrine-hallmark genes, these tumors were copy number-neutral with low mutational ","dates":{"release":"2018-01-01T00:00:00Z","publication":"2018 Nov","modification":"2026-05-05T23:02:54.013Z","creation":"2019-03-27T00:09:01Z"},"accession":"S-EPMC6249266","cross_references":{"pubmed":["30464211"],"doi":["10.1038/s41467-018-07270-2"]}}