<HashMap><database>biostudies-literature</database><scores/><additional><submitter>Barsakis K</submitter><funding>NINDS NIH HHS</funding><funding>National Institutes of Health</funding><pagination>437-448</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC6622178</full_dataset_link><repository>biostudies-literature</repository><omics_type>Unknown</omics_type><volume>80(7)</volume><pubmed_abstract>Next Generation Sequencing allows for testing and typing of entire genes of the HLA region. A better and comprehensive sequence assessment can be achieved by the inclusion of full gene sequences of all the common alleles at a given locus. The common alleles of DRB5 are under-characterized with the full exon-intron sequence of two alleles available. In the present study the DRB5 genes from 18 subjects alleles were cloned and sequenced; haplotype analysis showed that 17 of them had a single copy of DRB5 and one consanguineous subject was homozygous at all HLA loci. Methodological approaches including robust and efficient long-range PCR amplification, molecular cloning, nucleotide sequencing and de novo sequence assembly were combined to characterize DRB5 alleles. DRB5 sequences covering from</pubmed_abstract><journal>Human immunology</journal><pubmed_title>Complete nucleotide sequence characterization of DRB5 alleles reveals a homogeneous allele group that is distinct from other DRB genes.</pubmed_title><pmcid>PMC6622178</pmcid><funding_grant_id>U19NS095774</funding_grant_id><funding_grant_id>U19 NS095774</funding_grant_id><pubmed_authors>Pickle W</pubmed_authors><pubmed_authors>Barsakis K</pubmed_authors><pubmed_authors>Chi A</pubmed_authors><pubmed_authors>Babrzadeh F</pubmed_authors><pubmed_authors>Mallempati K</pubmed_authors><pubmed_authors>Mindrinos M</pubmed_authors><pubmed_authors>Fernandez-Vina MA</pubmed_authors></additional><is_claimable>false</is_claimable><name>Complete nucleotide sequence characterization of DRB5 alleles reveals a homogeneous allele group that is distinct from other DRB genes.</name><description>Next Generation Sequencing allows for testing and typing of entire genes of the HLA region. A better and comprehensive sequence assessment can be achieved by the inclusion of full gene sequences of all the common alleles at a given locus. The common alleles of DRB5 are under-characterized with the full exon-intron sequence of two alleles available. In the present study the DRB5 genes from 18 subjects alleles were cloned and sequenced; haplotype analysis showed that 17 of them had a single copy of DRB5 and one consanguineous subject was homozygous at all HLA loci. Methodological approaches including robust and efficient long-range PCR amplification, molecular cloning, nucleotide sequencing and de novo sequence assembly were combined to characterize DRB5 alleles. DRB5 sequences covering from</description><dates><release>2019-01-01T00:00:00Z</release><publication>2019 Jul</publication><modification>2026-04-12T23:59:03.247Z</modification><creation>2020-07-04T07:17:01Z</creation></dates><accession>S-EPMC6622178</accession><cross_references><pubmed>30954494</pubmed><doi>10.1016/j.humimm.2019.04.001</doi></cross_references></HashMap>