{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["9(1)"],"submitter":["Khamis FM"],"pubmed_abstract":["The fruit fly species, Ceratitis rosa sensu stricto and Ceratitis quilicii, are sibling species restricted to the lowland and highland regions, respectively. Until recently, these sibling species were considered as allopatric populations of C. rosa with distinct bionomics. We used deep Next Generation Sequencing (NGS) technology on intact guts of individuals from the two sibling species to compare their transcriptional profiles and simultaneously understand gut microbiome and host molecular processes and identify distinguishing genetic differences between the two species. Since the genomes of both species had not been published previously, the transcriptomes were assembled de novo into transcripts. Microbe-specific transcript orthologs were separated from the assembly by filtering searches"],"journal":["Scientific reports"],"pagination":["18355"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC6892911"],"repository":["biostudies-literature"],"pubmed_title":["Species-specific transcriptional profiles of the gut and gut microbiome of Ceratitis quilicii and Ceratitis rosa sensu stricto."],"pmcid":["PMC6892911"],"pubmed_authors":["Awuoche EO","Ombura FLO","Ekesi S","Tanga CM","Malacrida AR","Rono M","Mireji PO","Mohamed SA","Khamis FM"],"additional_accession":[]},"is_claimable":false,"name":"Species-specific transcriptional profiles of the gut and gut microbiome of Ceratitis quilicii and Ceratitis rosa sensu stricto.","description":"The fruit fly species, Ceratitis rosa sensu stricto and Ceratitis quilicii, are sibling species restricted to the lowland and highland regions, respectively. Until recently, these sibling species were considered as allopatric populations of C. rosa with distinct bionomics. We used deep Next Generation Sequencing (NGS) technology on intact guts of individuals from the two sibling species to compare their transcriptional profiles and simultaneously understand gut microbiome and host molecular processes and identify distinguishing genetic differences between the two species. Since the genomes of both species had not been published previously, the transcriptomes were assembled de novo into transcripts. Microbe-specific transcript orthologs were separated from the assembly by filtering searches","dates":{"release":"2019-01-01T00:00:00Z","publication":"2019 Dec","modification":"2026-05-09T00:35:41.526Z","creation":"2020-05-21T22:24:44Z"},"accession":"S-EPMC6892911","cross_references":{"pubmed":["31798006"],"doi":["10.1038/s41598-019-54989-z"]}}