{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["29"],"submitter":["Mary Mathew K"],"funding":["Secretary, Spices Board of India, Ministry of Commerce and Industry, Government of India"],"pubmed_abstract":["Large cardamom (<i>Amomum subulatum</i> Roxburg), is an ancient spice native to North-Eastern India and Southeast Asia, which belongs to the family <i>Zingiberaceae</i> under the order <i>Scitaminae.</i> Large cardamom is mostly affected by a viral disease termed Chirke caused by Large Cardamom Chirke Virus (LCCV). These disease has spread due to drastic changes in the ecosystem, inadequate rain in dry months and absence of good agricultural practices by the farmers resulting in aphid infestations. In the present study, using HiSeq™ 2000 RNA sequencing technology transcriptome sequencing was performed for both control (disease not expressed) and diseased large cardamom leaf tissues. RNA-seq generated 77260968 (7.72 GB) and 72239708 (7.22 GB) paired raw reads for large cardamom control and "],"journal":["Data in brief"],"pagination":["105047"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC6970142"],"repository":["biostudies-literature"],"pubmed_title":["Data on large cardamom transcriptome associated with Chirke disease."],"pmcid":["PMC6970142"],"pubmed_authors":["Reshma R","Remashree AB","Geethu M","Swapna S","Prakashkumar R","Gouthaman PP","Noushad MA","Dharan SS","Sabu KK","Nadiya F","Mary Mathew K","Rithin V"],"additional_accession":[]},"is_claimable":false,"name":"Data on large cardamom transcriptome associated with Chirke disease.","description":"Large cardamom (<i>Amomum subulatum</i> Roxburg), is an ancient spice native to North-Eastern India and Southeast Asia, which belongs to the family <i>Zingiberaceae</i> under the order <i>Scitaminae.</i> Large cardamom is mostly affected by a viral disease termed Chirke caused by Large Cardamom Chirke Virus (LCCV). These disease has spread due to drastic changes in the ecosystem, inadequate rain in dry months and absence of good agricultural practices by the farmers resulting in aphid infestations. In the present study, using HiSeq™ 2000 RNA sequencing technology transcriptome sequencing was performed for both control (disease not expressed) and diseased large cardamom leaf tissues. RNA-seq generated 77260968 (7.72 GB) and 72239708 (7.22 GB) paired raw reads for large cardamom control and ","dates":{"release":"2020-01-01T00:00:00Z","publication":"2020 Apr","modification":"2026-04-08T06:02:23.136Z","creation":"2020-05-22T08:41:38Z"},"accession":"S-EPMC6970142","cross_references":{"pubmed":["31989006"],"doi":["10.1016/j.dib.2019.105047"]}}