{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Meyer B"],"funding":["Deutsche Forschungsgemeinschaft"],"pagination":["1435-1450"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC7026641"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["48(3)"],"pubmed_abstract":["tRNAs from all domains of life contain modified nucleotides. However, even for the experimentally most thoroughly characterized model organism Escherichia coli not all tRNA modification enzymes are known. In particular, no enzyme has been found yet for introducing the acp3U modification at position 47 in the variable loop of eight E. coli tRNAs. Here we identify the so far functionally uncharacterized YfiP protein as the SAM-dependent 3-amino-3-carboxypropyl transferase catalyzing this modification and thereby extend the list of known tRNA modification enzymes in E. coli. Similar to the Tsr3 enzymes that introduce acp modifications at U or m1Ψ nucleotides in rRNAs this protein contains a DTW domain suggesting that acp transfer reactions to RNA nucleotides are a general function of DTW doma"],"journal":["Nucleic acids research"],"pubmed_title":["Identification of the 3-amino-3-carboxypropyl (acp) transferase enzyme responsible for acp3U formation at position 47 in Escherichia coli tRNAs."],"pmcid":["PMC7026641"],"funding_grant_id":["Wo901/7-1","Ke1943/3-1","Ke1943/4-1","En134/16-1"],"pubmed_authors":["Meyer B","Yang J","Kotter A","Sharma S","Kaiser S","Weiß L","Immer C","Kotter P","Entian KD","Watzinger P","Helm M","Wohnert J","Seitz HM","Kellner S"],"additional_accession":[]},"is_claimable":false,"name":"Identification of the 3-amino-3-carboxypropyl (acp) transferase enzyme responsible for acp3U formation at position 47 in Escherichia coli tRNAs.","description":"tRNAs from all domains of life contain modified nucleotides. However, even for the experimentally most thoroughly characterized model organism Escherichia coli not all tRNA modification enzymes are known. In particular, no enzyme has been found yet for introducing the acp3U modification at position 47 in the variable loop of eight E. coli tRNAs. Here we identify the so far functionally uncharacterized YfiP protein as the SAM-dependent 3-amino-3-carboxypropyl transferase catalyzing this modification and thereby extend the list of known tRNA modification enzymes in E. coli. Similar to the Tsr3 enzymes that introduce acp modifications at U or m1Ψ nucleotides in rRNAs this protein contains a DTW domain suggesting that acp transfer reactions to RNA nucleotides are a general function of DTW doma","dates":{"release":"2020-01-01T00:00:00Z","publication":"2020 Feb","modification":"2025-04-21T20:07:37.109Z","creation":"2020-05-22T10:55:12Z"},"accession":"S-EPMC7026641","cross_references":{"pubmed":["31863583"],"doi":["10.1093/nar/gkz1191"]}}