<HashMap><database>biostudies-literature</database><scores/><additional><omics_type>Unknown</omics_type><volume>5(9)</volume><submitter>Khayer K</submitter><pubmed_abstract>In the present work, a theoretical study was carried out to study the molecular structure, harmonic vibrational frequencies, normal force field calculations, and Raman scattering activities for fluorene ?-conjugation spacer containing azo-based dye named trans- and cis-bis(9H-fluoren-2-yl)diazene (AzoFL) at density functional theory using B3LYP (Becke-3-Lee-Yang-Parr) functional and 6-31+G(d,p) basis set. The theoretical calculations have also been performed with fluorene and the trans- and cis-isomers of diazene, difluorodiazene by the same method DFT-B3LYP/6-31+G(d,p) and basis set. The present DFT calculation shows that the trans-AzoFL is more stable than the cis-AzoFL by 16.33 kcal/mol. We also report the results of new assignments of vibrational frequencies obtained on the basis of the present calculations. Time-dependent DFT (TD-DFT) and ZIndo calculations have been performed to study the UV-vis absorption behavior and frontier molecular orbitals for the above-mentioned compounds. The UV-vis spectrum from TD-DFT calculation shows the ?-?* transition bands at ?max 423.53 nm (?max 6.0 × 104 M-1 cm-1) and at ?max 359.45 nm (?max 1.7 × 104 M-1 cm-1), respectively, for trans- and cis-AzoFL. Compared to parent trans-diazene (?max 178.97 nm), a significant variation to longer wavelength (?245 nm) is observed due to the incorporation of the fluorene (FL) ring into the -N=N- backbone. The co-planarity of the two FL rings with the longer N=N bond length compared to the unsubstituted parent diazene indicates the effective red shift due to the extended ?-conjugation in trans-AzoFL. The nonplanarity of cis-AzoFL (48.1° tilted about the C-N bond relative to the planar N=N-C bond) reflects its ?64 nm blue shift compared to that of trans-counterpart.</pubmed_abstract><journal>ACS omega</journal><pagination>4507-4531</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC7066559</full_dataset_link><repository>biostudies-literature</repository><pubmed_title>Density Functional Theory Calculation on the Structural, Electronic, and Optical Properties of Fluorene-Based Azo Compounds.</pubmed_title><pmcid>PMC7066559</pmcid><pubmed_authors>Khayer K</pubmed_authors><pubmed_authors>Haque T</pubmed_authors></additional><is_claimable>false</is_claimable><name>Density Functional Theory Calculation on the Structural, Electronic, and Optical Properties of Fluorene-Based Azo Compounds.</name><description>In the present work, a theoretical study was carried out to study the molecular structure, harmonic vibrational frequencies, normal force field calculations, and Raman scattering activities for fluorene ?-conjugation spacer containing azo-based dye named trans- and cis-bis(9H-fluoren-2-yl)diazene (AzoFL) at density functional theory using B3LYP (Becke-3-Lee-Yang-Parr) functional and 6-31+G(d,p) basis set. The theoretical calculations have also been performed with fluorene and the trans- and cis-isomers of diazene, difluorodiazene by the same method DFT-B3LYP/6-31+G(d,p) and basis set. The present DFT calculation shows that the trans-AzoFL is more stable than the cis-AzoFL by 16.33 kcal/mol. We also report the results of new assignments of vibrational frequencies obtained on the basis of the present calculations. Time-dependent DFT (TD-DFT) and ZIndo calculations have been performed to study the UV-vis absorption behavior and frontier molecular orbitals for the above-mentioned compounds. The UV-vis spectrum from TD-DFT calculation shows the ?-?* transition bands at ?max 423.53 nm (?max 6.0 × 104 M-1 cm-1) and at ?max 359.45 nm (?max 1.7 × 104 M-1 cm-1), respectively, for trans- and cis-AzoFL. Compared to parent trans-diazene (?max 178.97 nm), a significant variation to longer wavelength (?245 nm) is observed due to the incorporation of the fluorene (FL) ring into the -N=N- backbone. The co-planarity of the two FL rings with the longer N=N bond length compared to the unsubstituted parent diazene indicates the effective red shift due to the extended ?-conjugation in trans-AzoFL. The nonplanarity of cis-AzoFL (48.1° tilted about the C-N bond relative to the planar N=N-C bond) reflects its ?64 nm blue shift compared to that of trans-counterpart.</description><dates><release>2020-01-01T00:00:00Z</release><publication>2020 Mar</publication><modification>2021-02-21T12:16:44Z</modification><creation>2020-05-22T13:11:22Z</creation></dates><accession>S-EPMC7066559</accession><cross_references><pubmed>32175498</pubmed><doi>10.1021/acsomega.9b03839</doi></cross_references></HashMap>