{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Yu T"],"funding":["‘‘Reintroduction Technologies and Demonstration of Extremely Rare Wild Plant Population’’ of National Key Research and Development Program","Ministry of Science and Technology of Taiwan"],"pagination":["409-418"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC7078402"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["26(3)"],"pubmed_abstract":["<i>Thuja sutchuenensis</i> is a critically endangered tertiary relict species of Cupressaceae from southwestern China. We sequenced the complete chloroplast (cp) genome of <i>T</i>. <i>sutchuenensis</i>, showing the genome content of 129,776 bp, 118 unique genes including 82 unique protein-coding genes, 32 tRNA genes, and 4 rRNA genes. The genome structures, gene order, and GC content are similar to other typical gymnosperm cp genomes. Thirty-eight simple sequence repeats were identified in the <i>T</i>. <i>sutchuenensis</i> cp genome. We also found an apparent inversion between <i>trnT</i> and <i>psbK</i> between genera <i>Thuja</i> and <i>Thujopsis</i>. In addition, positive selection signals were detected in seven genes with high Ka/Ks ratios. The reconstructed phylogeny based on locall"],"journal":["Physiology and molecular biology of plants : an international journal of functional plant biology"],"pubmed_title":["Chloroplast genome of an extremely endangered conifer <i>Thuja sutchuenensis</i> Franch.: gene organization, comparative and phylogenetic analysis."],"pmcid":["PMC7078402"],"funding_grant_id":["MOST 105–2628-B-003–002-MY3","2016YFC0503106","MOST 105–2628-B-003–001-MY3"],"pubmed_authors":["Li JQ","Zhang Y","Huang BH","Liao PC","Yu T"],"additional_accession":[]},"is_claimable":false,"name":"Chloroplast genome of an extremely endangered conifer <i>Thuja sutchuenensis</i> Franch.: gene organization, comparative and phylogenetic analysis.","description":"<i>Thuja sutchuenensis</i> is a critically endangered tertiary relict species of Cupressaceae from southwestern China. We sequenced the complete chloroplast (cp) genome of <i>T</i>. <i>sutchuenensis</i>, showing the genome content of 129,776 bp, 118 unique genes including 82 unique protein-coding genes, 32 tRNA genes, and 4 rRNA genes. The genome structures, gene order, and GC content are similar to other typical gymnosperm cp genomes. Thirty-eight simple sequence repeats were identified in the <i>T</i>. <i>sutchuenensis</i> cp genome. We also found an apparent inversion between <i>trnT</i> and <i>psbK</i> between genera <i>Thuja</i> and <i>Thujopsis</i>. In addition, positive selection signals were detected in seven genes with high Ka/Ks ratios. The reconstructed phylogeny based on locall","dates":{"release":"2020-01-01T00:00:00Z","publication":"2020 Mar","modification":"2026-04-30T17:10:24.905Z","creation":"2021-03-03T08:08:47Z"},"accession":"S-EPMC7078402","cross_references":{"pubmed":["32205919"],"doi":["10.1007/s12298-019-00736-7"]}}