{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["7(1)"],"submitter":["Li SF"],"funding":["the Natinal Natural Science Foundation of China","the National Natural Science Foundation of China","the Key Scientific Research Projects of Colleges and Universities in Henan Province"],"pubmed_abstract":["<i>Asparagus setaceus</i> is a popular ornamental plant cultivated in tropical and subtropical regions globally. Here, we constructed a chromosome-scale reference genome of <i>A. setaceus</i> to facilitate the investigation of its genome characteristics and evolution. Using a combination of Nanopore long reads, Illumina short reads, 10× Genomics linked reads, and Hi-C data, we generated a high-quality genome assembly of <i>A. setaceus</i> covering 710.15 Mb, accounting for 98.63% of the estimated genome size. A total of 96.85% of the sequences were anchored to ten superscaffolds corresponding to the ten chromosomes. The genome of <i>A. setaceus</i> was predicted to contain 28,410 genes, 25,649 (90.28%) of which were functionally annotated. A total of 65.59% of the genome was occupied by re"],"journal":["Horticulture research"],"pagination":["48"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC7109074"],"repository":["biostudies-literature"],"pubmed_title":["Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant <i>Asparagus setaceus</i>."],"pmcid":["PMC7109074"],"pubmed_authors":["Lan LN","Deng CL","Zhang YL","Li SF","Zhu HW","Wang J","Dong R","Li N","Gao WJ"],"additional_accession":[]},"is_claimable":false,"name":"Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant <i>Asparagus setaceus</i>.","description":"<i>Asparagus setaceus</i> is a popular ornamental plant cultivated in tropical and subtropical regions globally. Here, we constructed a chromosome-scale reference genome of <i>A. setaceus</i> to facilitate the investigation of its genome characteristics and evolution. Using a combination of Nanopore long reads, Illumina short reads, 10× Genomics linked reads, and Hi-C data, we generated a high-quality genome assembly of <i>A. setaceus</i> covering 710.15 Mb, accounting for 98.63% of the estimated genome size. A total of 96.85% of the sequences were anchored to ten superscaffolds corresponding to the ten chromosomes. The genome of <i>A. setaceus</i> was predicted to contain 28,410 genes, 25,649 (90.28%) of which were functionally annotated. A total of 65.59% of the genome was occupied by re","dates":{"release":"2020-01-01T00:00:00Z","publication":"2020","modification":"2026-05-04T17:23:48.921Z","creation":"2025-05-29T19:04:09.445Z"},"accession":"S-EPMC7109074","cross_references":{"pubmed":["32257234"],"doi":["10.1038/s41438-020-0271-y"]}}