{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["95"],"submitter":["Abdollahzadeh J"],"funding":["University of Kurdistan"],"pubmed_abstract":["The <i>Capnodiales</i>, which includes fungi known as the sooty moulds, represents the second largest order in <i>Dothideomycetes</i>, encompassing morphologically and ecologically diverse fungi with different lifestyles and modes of nutrition. They include saprobes, plant and human pathogens, mycoparasites, rock-inhabiting fungi (RIF), lichenised, epi-, ecto- and endophytes. The aim of this study was to elucidate the lifestyles and evolutionary patterns of the <i>Capnodiales</i> as well as to reconsider their phylogeny by including numerous new collections of sooty moulds, and using four nuclear loci, LSU, ITS, <i>TEF-1α</i> and <i>RPB2</i>. Based on the phylogenetic results, combined with morphology and ecology, <i>Capnodiales s. lat.</i> is shown to be polyphyletic, representing seven different orders. The sooty moulds are restricted to <i>Capnodiales s. str.</i>, while <i>Mycosphaerellales</i> is resurrected, and five new orders including <i>Cladosporiales</i>, <i>Comminutisporales</i>, <i>Neophaeothecales</i>, <i>Phaeothecales</i> and <i>Racodiales</i> are introduced. Four families, three genera, 21 species and five combinations are introduced as new. Furthermore, ancestral reconstruction analysis revealed that the saprobic lifestyle is a primitive state in <i>Capnodiales s. lat</i>., and that several transitions have occurred to evolve lichenised, plant and human parasitic, ectophytic (sooty blotch and flyspeck) and more recently epiphytic (sooty mould) lifestyles."],"journal":["Studies in mycology"],"pagination":["381-414"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC7426231"],"repository":["biostudies-literature"],"pubmed_title":["Evolution of lifestyles in <i>Capnodiales</i>."],"pmcid":["PMC7426231"],"pubmed_authors":["Coetzee MPA","Abdollahzadeh J","Groenewald JZ","Wingfield MJ","Crous PW"],"additional_accession":[]},"is_claimable":false,"name":"Evolution of lifestyles in <i>Capnodiales</i>.","description":"The <i>Capnodiales</i>, which includes fungi known as the sooty moulds, represents the second largest order in <i>Dothideomycetes</i>, encompassing morphologically and ecologically diverse fungi with different lifestyles and modes of nutrition. They include saprobes, plant and human pathogens, mycoparasites, rock-inhabiting fungi (RIF), lichenised, epi-, ecto- and endophytes. The aim of this study was to elucidate the lifestyles and evolutionary patterns of the <i>Capnodiales</i> as well as to reconsider their phylogeny by including numerous new collections of sooty moulds, and using four nuclear loci, LSU, ITS, <i>TEF-1α</i> and <i>RPB2</i>. Based on the phylogenetic results, combined with morphology and ecology, <i>Capnodiales s. lat.</i> is shown to be polyphyletic, representing seven different orders. The sooty moulds are restricted to <i>Capnodiales s. str.</i>, while <i>Mycosphaerellales</i> is resurrected, and five new orders including <i>Cladosporiales</i>, <i>Comminutisporales</i>, <i>Neophaeothecales</i>, <i>Phaeothecales</i> and <i>Racodiales</i> are introduced. Four families, three genera, 21 species and five combinations are introduced as new. Furthermore, ancestral reconstruction analysis revealed that the saprobic lifestyle is a primitive state in <i>Capnodiales s. lat</i>., and that several transitions have occurred to evolve lichenised, plant and human parasitic, ectophytic (sooty blotch and flyspeck) and more recently epiphytic (sooty mould) lifestyles.","dates":{"release":"2020-01-01T00:00:00Z","publication":"2020 Mar","modification":"2024-02-15T22:24:41.296Z","creation":"2020-08-30T07:19:50Z"},"accession":"S-EPMC7426231","cross_references":{"pubmed":["32855743"],"doi":["10.1016/j.simyco.2020.02.004"]}}