{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Parrello B"],"funding":["National Institute of Allergy and Infectious Diseases","NIAID NIH HHS"],"pagination":["e0250092"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8049274"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["16(4)"],"pubmed_abstract":["Large amounts of metagenomically-derived data are submitted to PATRIC for analysis. In the future, we expect even more jobs submitted to PATRIC will use metagenomic data. One in-demand use case is the extraction of near-complete draft genomes from assembled contigs of metagenomic origin. The PATRIC metagenome binning service utilizes the PATRIC database to furnish a large, diverse set of reference genomes. We provide a new service for supervised extraction and annotation of high-quality, near-complete genomes from metagenomically-derived contigs. Reference genomes are assigned to putative draft genome bins based on the presence of single-copy universal marker roles in the sample, and contigs are sorted into these bins by their similarity to reference genomes in PATRIC. Each set of binned c"],"journal":["PloS one"],"pubmed_title":["Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC."],"pmcid":["PMC8049274"],"funding_grant_id":["HHSN272201400027C"],"pubmed_authors":["Butler R","Chlenski P","Overbeek R","Parrello B","Pusch GD"],"additional_accession":[]},"is_claimable":false,"name":"Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC.","description":"Large amounts of metagenomically-derived data are submitted to PATRIC for analysis. In the future, we expect even more jobs submitted to PATRIC will use metagenomic data. One in-demand use case is the extraction of near-complete draft genomes from assembled contigs of metagenomic origin. The PATRIC metagenome binning service utilizes the PATRIC database to furnish a large, diverse set of reference genomes. We provide a new service for supervised extraction and annotation of high-quality, near-complete genomes from metagenomically-derived contigs. Reference genomes are assigned to putative draft genome bins based on the presence of single-copy universal marker roles in the sample, and contigs are sorted into these bins by their similarity to reference genomes in PATRIC. Each set of binned c","dates":{"release":"2021-01-01T00:00:00Z","publication":"2021","modification":"2025-04-26T07:25:18.376Z","creation":"2022-02-09T15:52:45.544Z"},"accession":"S-EPMC8049274","cross_references":{"pubmed":["33857229"],"doi":["10.1371/journal.pone.0250092"]}}