{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Valcek A"],"funding":["Charles University Research Fund PROGRES","Ministry of Education Youth and Sports of the Czech Republic","National Sustainability Program I","Horizon 2020","OH-EJP-H2020-JRP-AMR-2-ARDIG","Internal Grant Agency of University of Veterinary and Pharmaceutical Sciences Brno","Czech Science Foundation","Utrecht University"],"pagination":["AAC.02556-20"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8092906"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["65(5)"],"pubmed_abstract":["The relatedness of the equine-associated <i>Escherichia coli</i> ST1250 and its single- and double-locus variants (ST1250-SLV/DLV), obtained from horses in Europe, was studied by comparative genome analysis. A total of 54 isolates of <i>E. coli</i> ST1250 and ST1250-SLV/DLV from healthy and hospitalized horses across Europe [Czech Republic (n=23), the Netherlands (n=18), Germany (n=9), Denmark (n=3) and France (n=1)] from 2008-2017 were subjected to whole-genome sequencing. An additional 25 draft genome assemblies of <i>E. coli</i> ST1250 and ST1250-SLV/DLV were obtained from the public databases. The isolates were compared for genomic features, virulence genes, clade structure and plasmid content. The complete nucleotide sequences of eight IncHI1/ST9 and one IncHI1/ST2 plasmids were obtai"],"journal":["Antimicrobial agents and chemotherapy"],"pubmed_title":["Horsing around: <i>Escherichia coli</i> ST1250 of equine origin harbouring epidemic IncHI1/ST9 plasmid with <i>bla</i> <sub>CTX-M-1</sub> and an operon for short-chain fructooligosaccharides metabolism."],"pmcid":["PMC8092906"],"funding_grant_id":["116/2015/FVL","CZ.02.1.01/0.0/0.0/16_019/0000787","204/2020/FVHE","Q39","LO1503","773830","18-23532S"],"pubmed_authors":["Brouwer MSM","Jamborova I","Wagenaar JA","van Duijkeren E","Valcek A","Hrabak J","Sismova P","Damborg P","Ewers C","Hasman H","Nesporova K","Overballe-Petersen S","Madec JY","Dolejska M","Kant A","Hordijk J","Bitar I"],"additional_accession":[]},"is_claimable":false,"name":"Horsing around: <i>Escherichia coli</i> ST1250 of equine origin harbouring epidemic IncHI1/ST9 plasmid with <i>bla</i> <sub>CTX-M-1</sub> and an operon for short-chain fructooligosaccharides metabolism.","description":"The relatedness of the equine-associated <i>Escherichia coli</i> ST1250 and its single- and double-locus variants (ST1250-SLV/DLV), obtained from horses in Europe, was studied by comparative genome analysis. A total of 54 isolates of <i>E. coli</i> ST1250 and ST1250-SLV/DLV from healthy and hospitalized horses across Europe [Czech Republic (n=23), the Netherlands (n=18), Germany (n=9), Denmark (n=3) and France (n=1)] from 2008-2017 were subjected to whole-genome sequencing. An additional 25 draft genome assemblies of <i>E. coli</i> ST1250 and ST1250-SLV/DLV were obtained from the public databases. The isolates were compared for genomic features, virulence genes, clade structure and plasmid content. The complete nucleotide sequences of eight IncHI1/ST9 and one IncHI1/ST2 plasmids were obtai","dates":{"release":"2023-01-01T00:00:00Z","publication":"2023 May","modification":"2026-05-07T22:14:55.266Z","creation":"2024-11-08T20:59:46.721Z"},"accession":"S-EPMC8092906","cross_references":{"pubmed":["33619063"],"doi":["10.1128/aac.02556-20","10.1128/AAC.02556-20"]}}