{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Gao J"],"funding":["The Program of science and technology of Inner Mongolia Autonomous Region","The Research Program of Science and Technology at Universities of Inner Mongolia Autonomous Region","National Natural Science Foundation of China"],"pagination":["997-1005"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8140056"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["27(5)"],"pubmed_abstract":["Single nucleotide polymorphisms (SNPs) are the most abundant and richest form of genomic polymorphism and, hence, are highly favorable markers for genetic map construction and genome-wide association studies. Based on the DNA specific-locus amplified fragment sequencing (SLAF-seq) for large-scale SNP detection, the genetic diversity and population structure of <i>Salix gordejevii</i> Y. L. Chang et Skv., a valuable sand-fixing shrub, was assessed in 199 accessions from 20 populations in Hunshandake Sandland of northern China. A total of 623.15 M reads resulted in 30.49 × sequencing depth on average and a mean Q30 of 95.70%, and 2,287,715 SNPs in 178,509 polymorphic SLAF tags were obtained. By discarding minor allele frequency > 0.05 and integrity > 0.8, a total of 93,600 SNPs were retained"],"journal":["Physiology and molecular biology of plants : an international journal of functional plant biology"],"pubmed_title":["SNP detection and population structure evaluation of <i>Salix gordejevii</i> Y. L. Chang et Skv. in Hunshandake Sandland, Inner Mongolia, China."],"pmcid":["PMC8140056"],"funding_grant_id":["NJZZ19185","41901063","201605052"],"pubmed_authors":["Ning XL","Gao J"],"additional_accession":[]},"is_claimable":false,"name":"SNP detection and population structure evaluation of <i>Salix gordejevii</i> Y. L. Chang et Skv. in Hunshandake Sandland, Inner Mongolia, China.","description":"Single nucleotide polymorphisms (SNPs) are the most abundant and richest form of genomic polymorphism and, hence, are highly favorable markers for genetic map construction and genome-wide association studies. Based on the DNA specific-locus amplified fragment sequencing (SLAF-seq) for large-scale SNP detection, the genetic diversity and population structure of <i>Salix gordejevii</i> Y. L. Chang et Skv., a valuable sand-fixing shrub, was assessed in 199 accessions from 20 populations in Hunshandake Sandland of northern China. A total of 623.15 M reads resulted in 30.49 × sequencing depth on average and a mean Q30 of 95.70%, and 2,287,715 SNPs in 178,509 polymorphic SLAF tags were obtained. By discarding minor allele frequency > 0.05 and integrity > 0.8, a total of 93,600 SNPs were retained","dates":{"release":"2021-01-01T00:00:00Z","publication":"2021 May","modification":"2025-05-29T20:30:47.233Z","creation":"2025-05-29T20:30:47.233Z"},"accession":"S-EPMC8140056","cross_references":{"pubmed":["34108824"],"doi":["10.1007/s12298-021-00994-4"]}}