biostudies-literatureGao JThe Program of science and technology of Inner Mongolia Autonomous RegionThe Research Program of Science and Technology at Universities of Inner Mongolia Autonomous RegionNational Natural Science Foundation of China997-1005https://www.ebi.ac.uk/biostudies/studies/S-EPMC8140056biostudies-literatureUnknown27(5)Single nucleotide polymorphisms (SNPs) are the most abundant and richest form of genomic polymorphism and, hence, are highly favorable markers for genetic map construction and genome-wide association studies. Based on the DNA specific-locus amplified fragment sequencing (SLAF-seq) for large-scale SNP detection, the genetic diversity and population structure of <i>Salix gordejevii</i> Y. L. Chang et Skv., a valuable sand-fixing shrub, was assessed in 199 accessions from 20 populations in Hunshandake Sandland of northern China. A total of 623.15 M reads resulted in 30.49 × sequencing depth on average and a mean Q30 of 95.70%, and 2,287,715 SNPs in 178,509 polymorphic SLAF tags were obtained. By discarding minor allele frequency > 0.05 and integrity > 0.8, a total of 93,600 SNPs were retainedPhysiology and molecular biology of plants : an international journal of functional plant biologySNP detection and population structure evaluation of <i>Salix gordejevii</i> Y. L. Chang et Skv. in Hunshandake Sandland, Inner Mongolia, China.PMC8140056NJZZ1918541901063201605052Ning XLGao JfalseSNP detection and population structure evaluation of <i>Salix gordejevii</i> Y. L. Chang et Skv. in Hunshandake Sandland, Inner Mongolia, China.Single nucleotide polymorphisms (SNPs) are the most abundant and richest form of genomic polymorphism and, hence, are highly favorable markers for genetic map construction and genome-wide association studies. Based on the DNA specific-locus amplified fragment sequencing (SLAF-seq) for large-scale SNP detection, the genetic diversity and population structure of <i>Salix gordejevii</i> Y. L. Chang et Skv., a valuable sand-fixing shrub, was assessed in 199 accessions from 20 populations in Hunshandake Sandland of northern China. A total of 623.15 M reads resulted in 30.49 × sequencing depth on average and a mean Q30 of 95.70%, and 2,287,715 SNPs in 178,509 polymorphic SLAF tags were obtained. By discarding minor allele frequency > 0.05 and integrity > 0.8, a total of 93,600 SNPs were retained2021-01-01T00:00:00Z2021 May2025-05-29T20:30:47.233Z2025-05-29T20:30:47.233ZS-EPMC81400563410882410.1007/s12298-021-00994-4