{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Chao N"],"funding":["China Agriculture Research System","Crop Germplasm Resources Protection Project of the Ministry of Agriculture and Rural Affairs of the People’s Republic of China","National Infrastructure for Crop Germplasm Resources"],"pagination":["e11964"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8351576"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["9"],"pubmed_abstract":["Mulberry (<i>Morus</i>, Moraceae) is an important economic plant with nutritional, medicinal, and ecological values. Lignin in mulberry can affect the quality of forage and the saccharification efficiency of mulberry twigs. The availability of the <i>Morus notabilis</i> genome makes it possible to perform a systematic analysis of the genes encoding the 11 protein families specific to the lignin branch of the phenylpropanoid pathway, providing the core genes for the <i>lignin toolbox</i> in mulberry. We performed genome-wide screening, which was combined with <i>de novo</i> transcriptome data for <i>Morus notabilis</i> and <i>Morus alba</i> variety <i>Fengchi</i>, to identify putative members of the lignin gene families followed by phylogenetic and expression profile analyses. We focused on"],"journal":["PeerJ"],"pubmed_title":["Genome-wide analysis of the lignin toolbox for <i>morus</i> and the roles of lignin related genes in response to zinc stress."],"pmcid":["PMC8351576"],"funding_grant_id":["NICGR-2019-43","CARS-18-ZJ0205","19190172"],"pubmed_authors":["Liu L","Chao N","Yu T","Hou C","Zhang L"],"additional_accession":[]},"is_claimable":false,"name":"Genome-wide analysis of the lignin toolbox for <i>morus</i> and the roles of lignin related genes in response to zinc stress.","description":"Mulberry (<i>Morus</i>, Moraceae) is an important economic plant with nutritional, medicinal, and ecological values. Lignin in mulberry can affect the quality of forage and the saccharification efficiency of mulberry twigs. The availability of the <i>Morus notabilis</i> genome makes it possible to perform a systematic analysis of the genes encoding the 11 protein families specific to the lignin branch of the phenylpropanoid pathway, providing the core genes for the <i>lignin toolbox</i> in mulberry. We performed genome-wide screening, which was combined with <i>de novo</i> transcriptome data for <i>Morus notabilis</i> and <i>Morus alba</i> variety <i>Fengchi</i>, to identify putative members of the lignin gene families followed by phylogenetic and expression profile analyses. We focused on","dates":{"release":"2021-01-01T00:00:00Z","publication":"2021","modification":"2026-05-02T03:11:17.704Z","creation":"2022-02-11T09:50:16.84Z"},"accession":"S-EPMC8351576","cross_references":{"pubmed":["34434666"],"doi":["10.7717/peerj.11964"]}}