{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Straube N"],"funding":["Deutsche Forschungsgemeinschaft","National Science Foundation"],"pagination":["210474"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8441122"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["8(9)"],"pubmed_abstract":["After initial detection of target archival DNA of a 116-year-old syntype specimen of the smooth lantern shark, <i>Etmopterus pusillus</i>, in a single-stranded DNA library, we shotgun-sequenced additional 9 million reads from this same DNA library. Sequencing reads were used for extracting mitochondrial sequence information for analyses of mitochondrial DNA characteristics and reconstruction of the mitochondrial genome. The archival DNA is highly fragmented. A total of 4599 mitochondrial reads were available for the genome reconstruction using an iterative mapping approach. The resulting genome sequence has 12 times coverage and a length of 16 741 bp. All 37 vertebrate mitochondrial loci plus the control region were identified and annotated. The mitochondrial NADH2 gene was subsequently us"],"journal":["Royal Society open science"],"pubmed_title":["Mitochondrial DNA sequencing of a wet-collection syntype demonstrates the importance of type material as genetic resource for lantern shark taxonomy (Chondrichthyes: Etmopteridae)."],"pmcid":["PMC8441122"],"funding_grant_id":["351649567","DEB-01132229"],"pubmed_authors":["Straube N","Naylor GJP","Hofreiter M","Preick M"],"additional_accession":[]},"is_claimable":false,"name":"Mitochondrial DNA sequencing of a wet-collection syntype demonstrates the importance of type material as genetic resource for lantern shark taxonomy (Chondrichthyes: Etmopteridae).","description":"After initial detection of target archival DNA of a 116-year-old syntype specimen of the smooth lantern shark, <i>Etmopterus pusillus</i>, in a single-stranded DNA library, we shotgun-sequenced additional 9 million reads from this same DNA library. Sequencing reads were used for extracting mitochondrial sequence information for analyses of mitochondrial DNA characteristics and reconstruction of the mitochondrial genome. The archival DNA is highly fragmented. A total of 4599 mitochondrial reads were available for the genome reconstruction using an iterative mapping approach. The resulting genome sequence has 12 times coverage and a length of 16 741 bp. All 37 vertebrate mitochondrial loci plus the control region were identified and annotated. The mitochondrial NADH2 gene was subsequently us","dates":{"release":"2021-01-01T00:00:00Z","publication":"2021 Sep","modification":"2026-05-09T10:18:19.766Z","creation":"2022-02-11T11:11:41.342Z"},"accession":"S-EPMC8441122","cross_references":{"pubmed":["34540250"],"doi":["10.1098/rsos.210474"]}}