{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["12"],"submitter":["Li R"],"pubmed_abstract":["An adult <i>Sinocyclocheilus maitianheensis</i>, a surface-dwelling golden-line barbel fish, was collected from Maitian river (Kunming City, Yunnan Province, China) for whole-genome sequencing, assembly, and annotation. We obtained a genome assembly of 1.7 Gb with a scaffold N50 of 1.4 Mb and a contig N50 of 24.7 kb. A total of 39,977 protein-coding genes were annotated. Based on a comparative phylogenetic analysis of five <i>Sinocyclocheilus</i> species and other five representative vertebrates with published genome sequences, we found that <i>S. maitianheensis</i> is close to <i>Sinocyclocheilus anophthalmus</i> (a cave-restricted species with similar locality). Moreover, the assembled genomes of <i>S. maitianheensis</i> and other four <i>Sinocyclocheilus</i> counterparts were used for a"],"journal":["Frontiers in genetics"],"pagination":["736500"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8523889"],"repository":["biostudies-literature"],"pubmed_title":["Whole-Genome Sequencing of <i>Sinocyclocheilus maitianheensis</i> Reveals Phylogenetic Evolution and Immunological Variances in Various <i>Sinocyclocheilus</i> Fishes."],"pmcid":["PMC8523889"],"pubmed_authors":["Wang M","Pan X","Bian C","Yang J","Zhang Y","Jiang W","Shi Q","Gao Z","Cheng L","Li R","Wang X","You X"],"additional_accession":[]},"is_claimable":false,"name":"Whole-Genome Sequencing of <i>Sinocyclocheilus maitianheensis</i> Reveals Phylogenetic Evolution and Immunological Variances in Various <i>Sinocyclocheilus</i> Fishes.","description":"An adult <i>Sinocyclocheilus maitianheensis</i>, a surface-dwelling golden-line barbel fish, was collected from Maitian river (Kunming City, Yunnan Province, China) for whole-genome sequencing, assembly, and annotation. We obtained a genome assembly of 1.7 Gb with a scaffold N50 of 1.4 Mb and a contig N50 of 24.7 kb. A total of 39,977 protein-coding genes were annotated. Based on a comparative phylogenetic analysis of five <i>Sinocyclocheilus</i> species and other five representative vertebrates with published genome sequences, we found that <i>S. maitianheensis</i> is close to <i>Sinocyclocheilus anophthalmus</i> (a cave-restricted species with similar locality). Moreover, the assembled genomes of <i>S. maitianheensis</i> and other four <i>Sinocyclocheilus</i> counterparts were used for a","dates":{"release":"2021-01-01T00:00:00Z","publication":"2021","modification":"2026-05-08T16:06:11.918Z","creation":"2024-11-09T14:15:07.544Z"},"accession":"S-EPMC8523889","cross_references":{"pubmed":["34675964"],"doi":["10.3389/fgene.2021.736500"]}}