{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["8(2)"],"submitter":["Lubna"],"pubmed_abstract":["<i>Aspergillus niger</i> strain CSR3 is an endophytic fungus that regulates plant endogenous hormones, secondary metabolites, and promotes plant growth during abiotic stress conditions. In this study, we sequenced the genome of <i>A. niger</i> (CSR3) and compared it with previously available <i>A. niger</i> strains. The final genome assembly was 35.8 Mb in size, consisting of 23 scaffolds with N50 scaffold length of 2.4 Mb. A total of 12,442 protein coding genes, 270 tRNA, and 57 rRNA were predicted in the CSR3 genome. We used comparative genomic analysis to provide insights into the genome's evolution and to elucidate the adaptive genomic signatures for bioactive secondary metabolite biosynthesis, hormones biosynthesis, and plant growth promoting activities. We also analyzed the transposa"],"journal":["Journal of fungi (Basel, Switzerland)"],"pagination":["107"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8877640"],"repository":["biostudies-literature"],"pubmed_title":["Unraveling the Genome Sequence of Plant Growth Promoting <i>Aspergillus niger</i> (CSR3) Provides Insight into the Synthesis of Secondary Metabolites and Its Comparative Genomics."],"pmcid":["PMC8877640"],"pubmed_authors":["Al-Harrasi A","Asif S","Bilal S","Khan AL","Kim KM","Asaf S","Lubna","Jan R"],"additional_accession":[]},"is_claimable":false,"name":"Unraveling the Genome Sequence of Plant Growth Promoting <i>Aspergillus niger</i> (CSR3) Provides Insight into the Synthesis of Secondary Metabolites and Its Comparative Genomics.","description":"<i>Aspergillus niger</i> strain CSR3 is an endophytic fungus that regulates plant endogenous hormones, secondary metabolites, and promotes plant growth during abiotic stress conditions. In this study, we sequenced the genome of <i>A. niger</i> (CSR3) and compared it with previously available <i>A. niger</i> strains. The final genome assembly was 35.8 Mb in size, consisting of 23 scaffolds with N50 scaffold length of 2.4 Mb. A total of 12,442 protein coding genes, 270 tRNA, and 57 rRNA were predicted in the CSR3 genome. We used comparative genomic analysis to provide insights into the genome's evolution and to elucidate the adaptive genomic signatures for bioactive secondary metabolite biosynthesis, hormones biosynthesis, and plant growth promoting activities. We also analyzed the transposa","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Jan","modification":"2026-06-18T03:09:43.173Z","creation":"2024-11-20T12:39:34.402Z"},"accession":"S-EPMC8877640","cross_references":{"pubmed":["35205861"],"doi":["10.3390/jof8020107"]}}